ATAC-seq_ENCSR419UYY
ATAC-seq ENCSR419UYY [biosample_summary="Homo sapiens GM19025"]
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| Id: | ATAC-seq/ENCSR419UYY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR419UYY [biosample_summary="Homo sapiens GM19025"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN836ESF|/analyses/ENCAN836ESF/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: Alignment file {ENCFF462RHM|/files/ENCFF462RHM/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 24810004 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF462RHM|/files/ENCFF462RHM/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.872127. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF462RHM|/files/ENCFF462RHM/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR419UYY | float |
ATAC-seq_ENCSR419UYY |
ATAC-seq ENCSR419UYY [biosample_summary="Homo sapiens GM19025"]
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[1.45, 39] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF915OAM.bed.gz | 3.36 MB | d3f34db061b4ebd4759b32bac088543c |
| ENCFF915OAM.bed.gz.dvc | 101.0 B | 7c9b472bf1626c6f0c74baf933c0256a |
| ENCFF915OAM.tabix.bed.gz | 1002.67 KB | 364634102038dd146fa9e94d5410b019 |
| ENCFF915OAM.tabix.bed.gz.dvc | 107.0 B | 9f774ecbc219ea8ad6913134f2089b06 |
| ENCFF915OAM.tabix.bed.gz.tbi | 417.71 KB | e1626bc6dcbb14f9c85f69750352640f |
| ENCFF915OAM.tabix.bed.gz.tbi.dvc | 110.0 B | feae670367bc21d8d947256491e8e613 |
| genomic_resource.yaml | 2.86 KB | 4b4306d59b50592ca70d40f706270118 |
| genomic_resource_original.yaml | 2.79 KB | 15618e881715a5541d7f773f334face2 |
| statistics/ |