Resource

Id ATAC-seq/ENCSR415LEBcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR415LEB [biosample_summary="Homo sapiens jejunum tissue female adult (59 years)"]
Description
Labels
  • accession: ENCSR415LEB
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002115/
  • biosample_summary: Homo sapiens jejunum tissue female adult (59 years)
  • date_created: 2019-06-02T04:30:55.551993+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR415LEB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (59 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR415LEB float

ATAC-seq_ENCSR415LEB
ATAC-seq ENCSR415LEB [biosample_summary="Homo sapiens jejunum tissue female adult (59 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR415LEB [1.44, 26.3]
n
44,174,905
mean
3.82
sd
1.84

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 441749051.37% 87309
chr1 4149417 1.67% 8070
chr2 3365025 1.39% 6783
chr3 2503044 1.26% 4931
chr4 1833021 0.96% 3623
chr5 2118873 1.17% 4272
chr6 2370552 1.39% 4715
chr7 2350665 1.48% 4654
chr8 1793277 1.24% 3607
chr9 1882918 1.36% 3713
chr10 2128793 1.59% 4333
chr11 2253122 1.67% 4489
chr12 1998695 1.50% 3916
chr13 1059542 0.93% 2114
chr14 1424430 1.33% 2743
chr15 1475018 1.45% 2955
chr16 1739021 1.93% 3469
chr17 2257083 2.71% 4391
chr18 958432 1.19% 1992
chr19 2127957 3.63% 3845
chr20 1244923 1.93% 2574
chr21 637725 1.37% 1272
chr22 1109285 2.18% 2214
chrX 1392390 0.89% 2627
chrY 1697 <0.01% 7
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 87309 150 2775 505.96 412
global segment-length histogram

Files

Filename Size md5
ENCFF322QRI.bed.gz 3.06 MB bc40146552726fa4bd051c341a1b9dfe
ENCFF322QRI.tabix.bed.gz 971.46 KB 750aeb565e0059f4c841379cb496b2b6
ENCFF322QRI.tabix.bed.gz.tbi 409.29 KB 3758f19bc72bc0001caf4762f8ae379a
genomic_resource.yaml 2.72 KB 57e8b92d62a786af7c9dce3697a33120
statistics/