ATAC-seq_ENCSR414DVK
ATAC-seq ENCSR414DVK [biosample_summary="Homo sapiens adrenal gland tissue female adult (51 years)"]
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| Id: | ATAC-seq/ENCSR414DVK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR414DVK [biosample_summary="Homo sapiens adrenal gland tissue female adult (51 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: pseudoreplicated peaks audit_error: Alignment file {ENCFF946URK|/files/ENCFF946URK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 12122240 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_internal_action: Released analysis {ENCAN481VYZ|/analyses/ENCAN481VYZ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN481VYZ|/analyses/ENCAN481VYZ/} has in progress subobject document {49215c69-33db-4187-b5f6-c9c77a2cafb7|/documents/49215c69-33db-4187-b5f6-c9c77a2cafb7/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF296LMD|/files/ENCFF296LMD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.12. audit_not_compliant: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF296LMD|/files/ENCFF296LMD/} (overlap peaks) and {ENCFF663KQH|/files/ENCFF663KQH/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 81117 and 32318 peaks. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF946URK|/files/ENCFF946URK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.896244. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR414DVK | float |
ATAC-seq_ENCSR414DVK |
ATAC-seq ENCSR414DVK [biosample_summary="Homo sapiens adrenal gland tissue female adult (51 years)"]
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[1.88, 31.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF296LMD.bed.gz | 1.88 MB | 94213d6eceb5ac0ecc37417c2d00b2c8 |
| ENCFF296LMD.bed.gz.dvc | 101.0 B | ee2acd79ea0e43fe3a931111f98e16eb |
| ENCFF296LMD.tabix.bed.gz | 662.63 KB | 254d480ce585fed5c998ae65c469e9be |
| ENCFF296LMD.tabix.bed.gz.dvc | 106.0 B | 2ad1a0cd28b78f7b3d06eb9d8fcf5bf4 |
| ENCFF296LMD.tabix.bed.gz.tbi | 359.84 KB | d24c956a7d56895a58667d45990b63ed |
| ENCFF296LMD.tabix.bed.gz.tbi.dvc | 110.0 B | b964b61d745a83f72267b432d834a8b1 |
| genomic_resource.yaml | 3.48 KB | 432d37fb62d659409c685952b5c16288 |
| genomic_resource_original.yaml | 3.37 KB | 85c0a787f84b1e0fd698fd6ba62c1699 |
| statistics/ |