Resource

Id ATAC-seq/ENCSR411NFBcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR411NFB [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours"]
Description
Labels
  • accession: ENCSR411NFB
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000537/
  • biosample_summary: Homo sapiens activated T-cell female adult (33 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours
  • date_created: 2021-01-22T21:03:23.550373+00:00
  • date_released: 2021-06-24
  • doi: 10.17989/ENCSR411NFB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR411NFB float

ATAC-seq_ENCSR411NFB
ATAC-seq ENCSR411NFB [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR411NFB [1.39, 42.4]
n
48,302,287
mean
8.69
sd
4.59

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 483022871.50% 82875
chr1 4785070 1.92% 8105
chr2 3804265 1.57% 6650
chr3 2926347 1.48% 5136
chr4 1865967 0.98% 3235
chr5 2334676 1.29% 4087
chr6 3011981 1.76% 5270
chr7 2374868 1.49% 4106
chr8 1962596 1.35% 3451
chr9 1891837 1.37% 3232
chr10 2256674 1.69% 3932
chr11 2317118 1.72% 3938
chr12 2412727 1.81% 4116
chr13 1151074 1.01% 2077
chr14 1684467 1.57% 2933
chr15 1612117 1.58% 2805
chr16 1790676 1.98% 2901
chr17 2513235 3.02% 4111
chr18 872508 1.09% 1550
chr19 2200949 3.75% 3478
chr20 1282010 1.99% 2231
chr21 647416 1.39% 1105
chr22 1052590 2.07% 1739
chrX 1550578 0.99% 2685
chrY 541 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 82875 150 3199 582.83 476
global segment-length histogram

Files

Filename Size md5
ENCFF845NWD.bed.gz 3.39 MB d5c29f964d98de81f7c4623d0186f05f
ENCFF845NWD.tabix.bed.gz 935.1 KB 8301c1e29a1dd735cab60c36f567971d
ENCFF845NWD.tabix.bed.gz.tbi 348.46 KB 9d1c5343b8bed7002929c237df65cdba
genomic_resource.yaml 1.9 KB 1402c01a0f9184fef6e67fae9792c427
statistics/