ATAC-seq_ENCSR410DWV
ATAC-seq ENCSR410DWV [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"]
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| Id: | ATAC-seq/ENCSR410DWV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR410DWV [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male child (6 years) with amyotrophic lateral sclerosis output_type: replicated peaks audit_internal_action: Released analysis {ENCAN032WVS|/analyses/ENCAN032WVS/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF628IGU|/files/ENCFF628IGU/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.750725. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF628IGU|/files/ENCFF628IGU/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.76. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF789NRH|/files/ENCFF789NRH/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.756094. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF789NRH|/files/ENCFF789NRH/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.76. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR410DWV | float |
ATAC-seq_ENCSR410DWV |
ATAC-seq ENCSR410DWV [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"]
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[1.48, 41.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF610SOB.bed.gz | 7.09 MB | 5aeeb06e63f3694bb627f9c4e98e3d06 |
| ENCFF610SOB.bed.gz.dvc | 101.0 B | 3d93077574fab92b5faea3926880af8c |
| ENCFF610SOB.tabix.bed.gz | 2.05 MB | 5bc2af0a833eff84a14a5aab41dd7015 |
| ENCFF610SOB.tabix.bed.gz.dvc | 107.0 B | bc704ff6f3594ad534b5e82578873cb8 |
| ENCFF610SOB.tabix.bed.gz.tbi | 595.5 KB | 3919a4e6104a9e300d3749a3afa05a49 |
| ENCFF610SOB.tabix.bed.gz.tbi.dvc | 110.0 B | 32f114d011c009ab391181996dcde648 |
| genomic_resource.yaml | 3.87 KB | 3829b9ddf628c419570840ed79e6c298 |
| genomic_resource_original.yaml | 3.75 KB | 5633bd628263e94416eb1509a833ff5a |
| statistics/ |