Resource

Id ATAC-seq/ENCSR409YCKcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR409YCK [biosample_summary="Homo sapiens GM19043"]
Description
Labels
  • accession: ENCSR409YCK
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0010837/
  • biosample_summary: Homo sapiens GM19043
  • date_created: 2020-11-24T22:02:37.597231+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR409YCK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR409YCK float

ATAC-seq_ENCSR409YCK
ATAC-seq ENCSR409YCK [biosample_summary="Homo sapiens GM19043"]
 HISTOGRAM FOR ATAC-seq_ENCSR409YCK [1.67, 38.8]
n
49,487,408
mean
7.85
sd
3.84

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 494874081.54% 101584
chr1 4387858 1.76% 8884
chr2 4476815 1.85% 9251
chr3 3614245 1.82% 7506
chr4 3012827 1.58% 6362
chr5 3089409 1.70% 6402
chr6 3425230 2.01% 7058
chr7 2841665 1.78% 5826
chr8 2540630 1.75% 5312
chr9 2000159 1.45% 4075
chr10 2423399 1.81% 4963
chr11 2391344 1.77% 4897
chr12 2452491 1.84% 5003
chr13 1383123 1.21% 2896
chr14 1451372 1.36% 2941
chr15 1347236 1.32% 2737
chr16 1292943 1.43% 2556
chr17 1465950 1.76% 2939
chr18 1185277 1.47% 2484
chr19 1087290 1.85% 2030
chr20 995268 1.54% 2086
chr21 432313 0.93% 875
chr22 510426 1.00% 1050
chrX 1565616 1.00% 3199
chrY 114522 0.20% 252
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 101584 150 2843 487.16 407
global segment-length histogram

Files

Filename Size md5
ENCFF589OTG.bed.gz 3.62 MB 4d293322dc8875d2d5218217d1a856b0
ENCFF589OTG.tabix.bed.gz 1.1 MB 28112b0414ca80209bd81cee595b8531
ENCFF589OTG.tabix.bed.gz.tbi 454.94 KB f45608d714b126744f1c9ba07e0d4985
genomic_resource.yaml 1.66 KB 2967c1731d9a8bf48270286cf0ba17ad
statistics/