ATAC-seq_ENCSR408IVU
ATAC-seq ENCSR408IVU [biosample_summary="Homo sapiens GM21526"]
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| Id: | ATAC-seq/ENCSR408IVU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR408IVU [biosample_summary="Homo sapiens GM21526"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN342ZHP|/analyses/ENCAN342ZHP/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF969IAI|/files/ENCFF969IAI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.20. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF090VTK|/files/ENCFF090VTK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.898927. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR408IVU | float |
ATAC-seq_ENCSR408IVU |
ATAC-seq ENCSR408IVU [biosample_summary="Homo sapiens GM21526"]
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[1.47, 30.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF969IAI.bed.gz | 3.54 MB | 01b98bcdd56cf42b1275e0c107232dbd |
| ENCFF969IAI.bed.gz.dvc | 101.0 B | c2bb3b89b8e5fd493d5461b433ab0adf |
| ENCFF969IAI.tabix.bed.gz | 1006.33 KB | 7777fae0b9e4c9420b125b69522d1c6a |
| ENCFF969IAI.tabix.bed.gz.dvc | 107.0 B | c35307bc3a8e011be8e618637475cc85 |
| ENCFF969IAI.tabix.bed.gz.tbi | 416.85 KB | c075b8015d884fc0b91953612371eef1 |
| ENCFF969IAI.tabix.bed.gz.tbi.dvc | 110.0 B | c99091507d020854ea0dd430a9f3bbae |
| genomic_resource.yaml | 2.24 KB | 17db5752ee2aa5312cbbd5f04f784020 |
| genomic_resource_original.yaml | 2.17 KB | eebfe840fcdee0f21afd845caa39cd22 |
| statistics/ |