ATAC-seq_ENCSR404OEO
ATAC-seq ENCSR404OEO [biosample_summary="Homo sapiens HG02763"]
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| Id: | ATAC-seq/ENCSR404OEO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR404OEO [biosample_summary="Homo sapiens HG02763"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN903WJB|/analyses/ENCAN903WJB/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN903WJB|/analyses/ENCAN903WJB/} has in progress subobject document {21add4c7-fa96-47de-a2d2-326fcf4f81f3|/documents/21add4c7-fa96-47de-a2d2-326fcf4f81f3/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF321SNO|/files/ENCFF321SNO/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.715947. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF321SNO|/files/ENCFF321SNO/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.78. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR404OEO | float |
ATAC-seq_ENCSR404OEO |
ATAC-seq ENCSR404OEO [biosample_summary="Homo sapiens HG02763"]
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[1.38, 38.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF780FGU.bed.gz | 3.27 MB | 320224e7eae1013efd1995597607a4e8 |
| ENCFF780FGU.bed.gz.dvc | 101.0 B | 76cedd348b207ae2e663ae39238cd9ae |
| ENCFF780FGU.tabix.bed.gz | 992.93 KB | f681902b939a4a2583233f42097673b7 |
| ENCFF780FGU.tabix.bed.gz.dvc | 107.0 B | 4e3637978b716c9c3eb95830ef33a677 |
| ENCFF780FGU.tabix.bed.gz.tbi | 418.01 KB | 367d08a6c48afc62f4f22da39f1921c1 |
| ENCFF780FGU.tabix.bed.gz.tbi.dvc | 110.0 B | 005a862c4992737031ecf5562aeed9e5 |
| genomic_resource.yaml | 2.71 KB | ff87123372a0497b329c2158236ff386 |
| genomic_resource_original.yaml | 2.64 KB | 8496436a56b78d59d8a04f03298039f2 |
| statistics/ |