ATAC-seq_ENCSR404LLJ
ATAC-seq ENCSR404LLJ [biosample_summary="Homo sapiens transverse colon tissue female adult (53 years)"]
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| Id: | ATAC-seq/ENCSR404LLJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR404LLJ [biosample_summary="Homo sapiens transverse colon tissue female adult (53 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN680ZYC|/analyses/ENCAN680ZYC/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN680ZYC|/analyses/ENCAN680ZYC/} has in progress subobject document {c2efb293-2a58-4455-a528-da147246a17f|/documents/c2efb293-2a58-4455-a528-da147246a17f/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF413SRZ|/files/ENCFF413SRZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.815462. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF413SRZ|/files/ENCFF413SRZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.83. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR404LLJ | float |
ATAC-seq_ENCSR404LLJ |
ATAC-seq ENCSR404LLJ [biosample_summary="Homo sapiens transverse colon tissue female adult (53 years)"]
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[1.28, 37.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF563UYM.bed.gz | 4.74 MB | ed7656106467465e9b3813c7aa0eaab8 |
| ENCFF563UYM.bed.gz.dvc | 101.0 B | 10980a09e042596a88d723959f9b6907 |
| ENCFF563UYM.tabix.bed.gz | 1.31 MB | 7981a84dc4b2cbe58b41fb6a2fbbd243 |
| ENCFF563UYM.tabix.bed.gz.dvc | 107.0 B | 73354e49921e9a2db52924fafb3f166e |
| ENCFF563UYM.tabix.bed.gz.tbi | 446.72 KB | db170fc6622e1b3d0cbc9a2eb2d6ad14 |
| ENCFF563UYM.tabix.bed.gz.tbi.dvc | 110.0 B | 21820e40901ea69df3e7923e5860b22d |
| genomic_resource.yaml | 2.8 KB | 7c7a5dd11262a006a5bb6a8455b3b7be |
| genomic_resource_original.yaml | 2.7 KB | 9598dc5829b72624ac540795a7630467 |
| statistics/ |