Resource

Id ATAC-seq/ENCSR403GBRcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR403GBR [biosample_summary="Homo sapiens heart right ventricle tissue male adult (55 years)"]
Description
Labels
  • accession: ENCSR403GBR
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002080/
  • biosample_summary: Homo sapiens heart right ventricle tissue male adult (55 years)
  • date_created: 2019-07-30T07:37:48.151617+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR403GBR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (55 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR403GBR float

ATAC-seq_ENCSR403GBR
ATAC-seq ENCSR403GBR [biosample_summary="Homo sapiens heart right ventricle tissue male adult (55 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR403GBR [1.34, 19.6]
n
62,815,070
mean
3.43
sd
1.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 628150701.95% 115420
chr1 5973556 2.40% 10863
chr2 5160308 2.13% 9740
chr3 3963572 2.00% 7518
chr4 2858671 1.50% 5416
chr5 3467532 1.91% 6508
chr6 3500929 2.05% 6570
chr7 3289495 2.06% 6155
chr8 2741712 1.89% 5158
chr9 2673141 1.93% 4837
chr10 3189855 2.38% 6030
chr11 3250221 2.41% 5813
chr12 2947096 2.21% 5378
chr13 1647511 1.44% 3159
chr14 1941817 1.81% 3555
chr15 2176542 2.13% 4042
chr16 2287324 2.53% 4067
chr17 2907140 3.49% 5001
chr18 1438910 1.79% 2875
chr19 2541338 4.34% 4099
chr20 1694766 2.63% 3116
chr21 898180 1.92% 1604
chr22 1436416 2.83% 2524
chrX 790534 0.51% 1313
chrY 38504 0.07% 79
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 115420 150 3905 544.23 441
global segment-length histogram

Files

Filename Size md5
ENCFF268IAU.bed.gz 4.08 MB 80552910eb20e61feb68fe9963507473
ENCFF268IAU.tabix.bed.gz 1.25 MB 26cdb482df55174494ae48971056b855
ENCFF268IAU.tabix.bed.gz.tbi 469.16 KB 6a20c3561454e96a6d8846a312f354e4
genomic_resource.yaml 2.72 KB 8c19f83cfc7c58466e8044e28517f888
statistics/