ATAC-seq_ENCSR400ISH
ATAC-seq ENCSR400ISH [biosample_summary="Homo sapiens HG02571"]
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| Id: | ATAC-seq/ENCSR400ISH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR400ISH [biosample_summary="Homo sapiens HG02571"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN375JVB|/analyses/ENCAN375JVB/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF030ITR|/files/ENCFF030ITR/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.803446. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF030ITR|/files/ENCFF030ITR/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR400ISH | float |
ATAC-seq_ENCSR400ISH |
ATAC-seq ENCSR400ISH [biosample_summary="Homo sapiens HG02571"]
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[1.48, 31.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF781HFK.bed.gz | 3.09 MB | 19f19c48dbfa3bbfe257702a82ab78a9 |
| ENCFF781HFK.bed.gz.dvc | 101.0 B | 5919d5db3342ef8c4da4d95050413d8b |
| ENCFF781HFK.tabix.bed.gz | 898.46 KB | 2a34dca1f36296b45926e55ffb37b5b9 |
| ENCFF781HFK.tabix.bed.gz.dvc | 106.0 B | f1b0ab6007dbf7fed712f460cc508c7a |
| ENCFF781HFK.tabix.bed.gz.tbi | 378.67 KB | f0d3074463f88b40eaf2a4477bea3026 |
| ENCFF781HFK.tabix.bed.gz.tbi.dvc | 110.0 B | a72a8fa9d05281781419648d64778dc1 |
| genomic_resource.yaml | 2.49 KB | f37e402ae55aabd26523cebb9a5518da |
| genomic_resource_original.yaml | 2.42 KB | 21e2e3471e6d402a0b64ee913b592a30 |
| statistics/ |