ATAC-seq_ENCSR392YGP
ATAC-seq ENCSR392YGP [biosample_summary="Homo sapiens effector memory CD8-positive, alpha-beta T cell male adult (33 years)"]
×
| Id: | ATAC-seq/ENCSR392YGP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR392YGP [biosample_summary="Homo sapiens effector memory CD8-positive, alpha-beta T cell male adult (33 years)"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (33 years) output_type: replicated peaks audit_internal_action: Released analysis {ENCAN513GMX|/analyses/ENCAN513GMX/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF260GQZ|/files/ENCFF260GQZ/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.845097. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF260GQZ|/files/ENCFF260GQZ/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF409UEH|/files/ENCFF409UEH/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.858971. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF409UEH|/files/ENCFF409UEH/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR392YGP | float |
ATAC-seq_ENCSR392YGP |
ATAC-seq ENCSR392YGP [biosample_summary="Homo sapiens effector memory CD8-positive, alpha-beta T cell male adult (33 years)"]
|
|
[1.23, 50.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF541PYT.bed.gz | 2.91 MB | c8e5f679a4c8784a36aa6d8cd109bc6c |
| ENCFF541PYT.bed.gz.dvc | 101.0 B | c8fed7ba133b652f947b2c3cc40f7401 |
| ENCFF541PYT.tabix.bed.gz | 846.48 KB | c21aeaa7d8e41c79418f7f025baa76f8 |
| ENCFF541PYT.tabix.bed.gz.dvc | 106.0 B | 19397e2209e2a7c1411fc647d93244a1 |
| ENCFF541PYT.tabix.bed.gz.tbi | 316.88 KB | 04070a52b6c32c0380bfe6b74fc0b887 |
| ENCFF541PYT.tabix.bed.gz.tbi.dvc | 110.0 B | 25d2385ea8edcf0a9bf10a7296509181 |
| genomic_resource.yaml | 3.81 KB | 56db7e390f7be951e01fe7d038941ed5 |
| genomic_resource_original.yaml | 3.69 KB | 87521677ccc4209c80564a9641ad1e84 |
| statistics/ |