ATAC-seq_ENCSR392UJM
ATAC-seq ENCSR392UJM [biosample_summary="Homo sapiens ovary tissue female adult (61 years)"]
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| Id: | ATAC-seq/ENCSR392UJM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR392UJM [biosample_summary="Homo sapiens ovary tissue female adult (61 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN711WZB|/analyses/ENCAN711WZB/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF925ACE|/files/ENCFF925ACE/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.7432. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF925ACE|/files/ENCFF925ACE/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.77. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR392UJM | float |
ATAC-seq_ENCSR392UJM |
ATAC-seq ENCSR392UJM [biosample_summary="Homo sapiens ovary tissue female adult (61 years)"]
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[1.31, 39.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF985FDY.bed.gz | 6.15 MB | 7bc73edb0b965d55ff93b533952ef485 |
| ENCFF985FDY.bed.gz.dvc | 101.0 B | b8e80b4a23754e2d189d18a88c926dcc |
| ENCFF985FDY.tabix.bed.gz | 1.84 MB | 996df33ced7b9157843c78eba793707a |
| ENCFF985FDY.tabix.bed.gz.dvc | 107.0 B | 3f14c8b3f811658f51e085223044dc33 |
| ENCFF985FDY.tabix.bed.gz.tbi | 523.94 KB | 5d8f6cdc127ea857e5bd8b853e7e92b4 |
| ENCFF985FDY.tabix.bed.gz.tbi.dvc | 110.0 B | d4a914a6cf0156912ee147018afddad5 |
| genomic_resource.yaml | 2.55 KB | a5a8147a689e4e9b6695f01e2ee59d3f |
| genomic_resource_original.yaml | 2.46 KB | 39f996fc8db028203ae8b56a5d89e710 |
| statistics/ |