ATAC-seq_ENCSR390SLL
ATAC-seq ENCSR390SLL [biosample_summary="Homo sapiens left cardiac atrium tissue female adult (42 years)"]
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| Id: | ATAC-seq/ENCSR390SLL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR390SLL [biosample_summary="Homo sapiens left cardiac atrium tissue female adult (42 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (42 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN584LTD|/analyses/ENCAN584LTD/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN584LTD|/analyses/ENCAN584LTD/} has in progress subobject document {f8bddd7e-34a4-4ce9-8f2f-367a2e8427e6|/documents/f8bddd7e-34a4-4ce9-8f2f-367a2e8427e6/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF459GAW|/files/ENCFF459GAW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.881712. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF459GAW|/files/ENCFF459GAW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR390SLL | float |
ATAC-seq_ENCSR390SLL |
ATAC-seq ENCSR390SLL [biosample_summary="Homo sapiens left cardiac atrium tissue female adult (42 years)"]
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[1.35, 39.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF803AAK.bed.gz | 4.63 MB | 7ba74f61012142a2e14af4be7ddaf11f |
| ENCFF803AAK.bed.gz.dvc | 101.0 B | e88c9ff1e61cb67f65a3cc6c12a9ed7a |
| ENCFF803AAK.tabix.bed.gz | 1.4 MB | 6d7971b38ce3997fe7d1c8855e870860 |
| ENCFF803AAK.tabix.bed.gz.dvc | 107.0 B | 6e92a142117d0935ecf7d8ef4ce40e0b |
| ENCFF803AAK.tabix.bed.gz.tbi | 475.43 KB | 601662cd120dd555c552a972fb5d722c |
| ENCFF803AAK.tabix.bed.gz.tbi.dvc | 110.0 B | 0963c93a4b61b39be52a6a551dda4abf |
| genomic_resource.yaml | 2.81 KB | 1a14ba136b483a54f4047d6399a917b9 |
| genomic_resource_original.yaml | 2.7 KB | 750000a47bb0bb44d11bee0185fd724f |
| statistics/ |