ATAC-seq_ENCSR383RDZ
ATAC-seq ENCSR383RDZ [biosample_summary="Homo sapiens GM19328"]
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| Id: | ATAC-seq/ENCSR383RDZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR383RDZ [biosample_summary="Homo sapiens GM19328"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN485ATM|/analyses/ENCAN485ATM/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF413LGS|/files/ENCFF413LGS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.810034. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF413LGS|/files/ENCFF413LGS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.85. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR383RDZ | float |
ATAC-seq_ENCSR383RDZ |
ATAC-seq ENCSR383RDZ [biosample_summary="Homo sapiens GM19328"]
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[1.64, 34.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF683FRF.bed.gz | 2.98 MB | eab2139d16226affaa2ce2b7cdd201c9 |
| ENCFF683FRF.bed.gz.dvc | 101.0 B | c62b409f92f0e4542ba6577ec270bdcb |
| ENCFF683FRF.tabix.bed.gz | 880.4 KB | ef1eb8288feb938650883fd50b798ee3 |
| ENCFF683FRF.tabix.bed.gz.dvc | 106.0 B | 3793d27d42b2a079316bce226e231641 |
| ENCFF683FRF.tabix.bed.gz.tbi | 385.74 KB | 839805a479540ae33d5ea12a0f0848e2 |
| ENCFF683FRF.tabix.bed.gz.tbi.dvc | 110.0 B | dc4c3d3bfd2fafc51923894d1d811ac6 |
| genomic_resource.yaml | 2.49 KB | 8377e4e608f3bfd5645a0a9dfb7ef2e2 |
| genomic_resource_original.yaml | 2.42 KB | a43687891260eeba404623cccb1e9c41 |
| statistics/ |