ATAC-seq_ENCSR381LJX
ATAC-seq ENCSR381LJX [biosample_summary="Homo sapiens HG03039"]
×
| Id: | ATAC-seq/ENCSR381LJX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR381LJX [biosample_summary="Homo sapiens HG03039"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN173VGV|/analyses/ENCAN173VGV/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN173VGV|/analyses/ENCAN173VGV/} has in progress subobject document {b7aeb49f-d830-4383-acb0-da4103b7d3e9|/documents/b7aeb49f-d830-4383-acb0-da4103b7d3e9/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF231QTG|/files/ENCFF231QTG/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.827071. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF231QTG|/files/ENCFF231QTG/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR381LJX | float |
ATAC-seq_ENCSR381LJX |
ATAC-seq ENCSR381LJX [biosample_summary="Homo sapiens HG03039"]
|
|
[1.53, 33.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF299PGG.bed.gz | 3.14 MB | 426b6a573d47ceeb7147b102c64d7847 |
| ENCFF299PGG.bed.gz.dvc | 101.0 B | 8bbbe1dfe1c192392823c98cb16b5bda |
| ENCFF299PGG.tabix.bed.gz | 962.88 KB | 7830240c484c016d8fdb93ab2111f2e0 |
| ENCFF299PGG.tabix.bed.gz.dvc | 106.0 B | 10f65dec21263627a0881128151e498c |
| ENCFF299PGG.tabix.bed.gz.tbi | 409.08 KB | 9226ca86529b47f83f4f433f07cbcc12 |
| ENCFF299PGG.tabix.bed.gz.tbi.dvc | 110.0 B | e036765f191b4e9941cd47ff2478403a |
| genomic_resource.yaml | 2.71 KB | 74afe78c44629a159505a3f53f9321db |
| genomic_resource_original.yaml | 2.64 KB | 02a77a64df75670cefa972d2348edeb1 |
| statistics/ |