Resource

Id ATAC-seq/ENCSR379NMTcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR379NMT [biosample_summary="Homo sapiens stimulated activated naive\ \ B cell male adult (40 years) treated with 1 \u03BCg/mL anti-CD40 for 72 hours,\ \ 10 \u03BCg/mL anti-IgM for 72 hours, 100 ng/mL Interleukin-4 for 72 hours"]
Description
Labels
  • accession: ENCSR379NMT
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000661/
  • biosample_summary: Homo sapiens stimulated activated naive B cell male adult (40 years) treated with 1 μg/mL anti-CD40 for 72 hours, 10 μg/mL anti-IgM for 72 hours, 100 ng/mL Interleukin-4 for 72 hours
  • date_created: 2021-08-25T21:57:22.671214+00:00
  • date_released: 2021-09-09
  • doi: 10.17989/ENCSR379NMT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (40 years) treated with 1 μg/mL anti-CD40 for 72 hours, 10 μg/mL anti-IgM for 72 hours, 100 ng/mL Interleukin-4 for 72 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR379NMT float

ATAC-seq_ENCSR379NMT
ATAC-seq ENCSR379NMT [biosample_summary="Homo sapiens stimulated activated naive\ \ B cell male adult (40 years) treated with 1 \u03BCg/mL anti-CD40 for 72 hours,\ \ 10 \u03BCg/mL anti-IgM for 72 hours, 100 ng/mL Interleukin-4 for 72 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR379NMT [1.27, 48.2]
n
66,030,421
mean
7.9
sd
4.55

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 660304212.05% 119396
chr1 6238615 2.51% 11114
chr2 5229951 2.16% 9708
chr3 4199626 2.12% 7818
chr4 2866694 1.51% 5481
chr5 3366388 1.85% 6321
chr6 4098028 2.40% 7479
chr7 3382571 2.12% 6179
chr8 2906269 2.00% 5470
chr9 2769902 2.00% 5055
chr10 3092106 2.31% 5664
chr11 3242843 2.40% 5711
chr12 3262225 2.45% 5888
chr13 1633611 1.43% 3097
chr14 2183574 2.04% 3912
chr15 2080463 2.04% 3754
chr16 2318954 2.57% 3934
chr17 3070765 3.69% 5146
chr18 1430850 1.78% 2768
chr19 2672394 4.56% 4256
chr20 1785288 2.77% 3246
chr21 892522 1.91% 1591
chr22 1445998 2.85% 2417
chrX 1755248 1.12% 3182
chrY 105536 0.18% 205
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 119396 150 3391 553.04 446
global segment-length histogram

Files

Filename Size md5
ENCFF587QZR.bed.gz 4.73 MB 55dda65dff896428c4ad04e47e913aea
ENCFF587QZR.tabix.bed.gz 1.3 MB 8fb029bca9f77e8e10f071952645f7c3
ENCFF587QZR.tabix.bed.gz.tbi 469.32 KB 21c9925160c74eb3d3517db5411865cc
genomic_resource.yaml 2.13 KB d7d0b07475b9e5718cd57f6d81753e57
statistics/