Resource
| Id | ATAC-seq/ENCSR374ZRW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary |
ATAC-seq ENCSR374ZRW [biosample_summary="Homo sapiens heart right ventricle tissue female adult (56 years)"]
|
| Description |
status: released biological_replicates: Rep 1 summary: female adult (56 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN394KBR|/analyses/ENCAN394KBR/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF830YCU|/files/ENCFF830YCU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.546206. audit_not_compliant: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF830YCU|/files/ENCFF830YCU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.68. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR374ZRW | float |
ATAC-seq_ENCSR374ZRW |
ATAC-seq ENCSR374ZRW [biosample_summary="Homo sapiens heart right ventricle tissue female adult (56 years)"]
|
 |
[1.34, 28.9] |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF790ZOM.bed.gz | 6.23 MB | fe2985e6dbdbc85b27440d5c6535d406 |
| ENCFF790ZOM.bed.gz.dvc | 101.0 B | 18f3d84b2a35f4694fd3e53957135673 |
| ENCFF790ZOM.tabix.bed.gz | 1.89 MB | 1f5b01adbc311f2f79e2e7dfc1a7e4e5 |
| ENCFF790ZOM.tabix.bed.gz.dvc | 107.0 B | 32da3a3f5b589a1397f03ecd559656c5 |
| ENCFF790ZOM.tabix.bed.gz.tbi | 508.37 KB | 20368abb72af8cf58d0f8a913eb47140 |
| ENCFF790ZOM.tabix.bed.gz.tbi.dvc | 110.0 B | a750cb48acc577c3fb9c908d37638cf3 |
| genomic_resource.yaml | 2.82 KB | 074eb2a22ebf15509e7d5786ff51df96 |
| statistics/ |