Resource
| Id | ATAC-seq/ENCSR374ZRW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR374ZRW [biosample_summary="Homo sapiens heart right ventricle tissue female adult (56 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (56 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN394KBR|/analyses/ENCAN394KBR/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF830YCU|/files/ENCFF830YCU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.546206. audit_not_compliant: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF830YCU|/files/ENCFF830YCU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.68. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR374ZRW | float |
ATAC-seq_ENCSR374ZRW |
ATAC-seq ENCSR374ZRW [biosample_summary="Homo sapiens heart right ventricle tissue female adult (56 years)"]
|
 |
[1.34, 28.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 92901502 | 2.89% | 174400 |
| chr1 | 9150227 | 3.68% | 16973 |
| chr2 | 7580936 | 3.13% | 14567 |
| chr3 | 6087691 | 3.07% | 11677 |
| chr4 | 3978364 | 2.09% | 7829 |
| chr5 | 4968012 | 2.74% | 9620 |
| chr6 | 5498009 | 3.22% | 10398 |
| chr7 | 4560911 | 2.86% | 8658 |
| chr8 | 4067455 | 2.80% | 7858 |
| chr9 | 4015482 | 2.90% | 7500 |
| chr10 | 4714004 | 3.52% | 8939 |
| chr11 | 4716187 | 3.49% | 8674 |
| chr12 | 4623844 | 3.47% | 8658 |
| chr13 | 2218529 | 1.94% | 4396 |
| chr14 | 2913399 | 2.72% | 5458 |
| chr15 | 3242611 | 3.18% | 6125 |
| chr16 | 3172466 | 3.51% | 5755 |
| chr17 | 4340434 | 5.21% | 7656 |
| chr18 | 1896694 | 2.36% | 3743 |
| chr19 | 3198996 | 5.46% | 5233 |
| chr20 | 2513720 | 3.90% | 4714 |
| chr21 | 1262214 | 2.70% | 2331 |
| chr22 | 1974949 | 3.89% | 3550 |
| chrX | 2205339 | 1.41% | 4084 |
| chrY | 1029 | <0.01% | 4 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 174400 | 150 | 3152 | 532.69 | 427 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF790ZOM.bed.gz | 6.23 MB | fe2985e6dbdbc85b27440d5c6535d406 |
| ENCFF790ZOM.tabix.bed.gz | 1.89 MB | 1f5b01adbc311f2f79e2e7dfc1a7e4e5 |
| ENCFF790ZOM.tabix.bed.gz.tbi | 508.37 KB | 20368abb72af8cf58d0f8a913eb47140 |
| genomic_resource.yaml | 2.82 KB | 074eb2a22ebf15509e7d5786ff51df96 |
| statistics/ |