ATAC-seq_ENCSR373GMM
ATAC-seq ENCSR373GMM [biosample_summary="Homo sapiens natural killer cell male adult (33 years)"]
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| Id: | ATAC-seq/ENCSR373GMM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR373GMM [biosample_summary="Homo sapiens natural killer cell male adult (33 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (33 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN274MVO|/analyses/ENCAN274MVO/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF667KDJ|/files/ENCFF667KDJ/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.70093. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF667KDJ|/files/ENCFF667KDJ/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.72. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR373GMM | float |
ATAC-seq_ENCSR373GMM |
ATAC-seq ENCSR373GMM [biosample_summary="Homo sapiens natural killer cell male adult (33 years)"]
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[1.3, 50.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF751CLW.bed.gz | 2.76 MB | a6fcb382ee8c1a49e8b92e6a3260d57d |
| ENCFF751CLW.bed.gz.dvc | 101.0 B | 50f2f7a7f0467131a6bb81a44e43505a |
| ENCFF751CLW.tabix.bed.gz | 792.51 KB | 6be86b63156d057660dbd69ab4df8c99 |
| ENCFF751CLW.tabix.bed.gz.dvc | 106.0 B | a633763ea4beed108fb21f1f7058572f |
| ENCFF751CLW.tabix.bed.gz.tbi | 302.08 KB | f764409647e92f5b48ba0c37499dc273 |
| ENCFF751CLW.tabix.bed.gz.tbi.dvc | 110.0 B | b85eb56e247465647ce0b8226e1f6d50 |
| genomic_resource.yaml | 2.57 KB | 32cd808c87b2a85f01cd14e9a501cc76 |
| genomic_resource_original.yaml | 2.47 KB | 4a4248f460d372120cffe17a8fb11b4e |
| statistics/ |