Resource
| Id | ATAC-seq/ENCSR372IGW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR372IGW [biosample_summary="Homo sapiens GM19395"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN771JPT|/analyses/ENCAN771JPT/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF668FJU|/files/ENCFF668FJU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.83589. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF668FJU|/files/ENCFF668FJU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR372IGW | float |
ATAC-seq_ENCSR372IGW |
ATAC-seq ENCSR372IGW [biosample_summary="Homo sapiens GM19395"]
|
 |
[1.47, 32.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 64166603 | 1.99% | 108247 |
| chr1 | 5651934 | 2.27% | 9380 |
| chr2 | 5709553 | 2.36% | 9867 |
| chr3 | 4665604 | 2.35% | 8092 |
| chr4 | 4036044 | 2.12% | 7074 |
| chr5 | 4064733 | 2.24% | 7038 |
| chr6 | 4429297 | 2.59% | 7505 |
| chr7 | 3705697 | 2.33% | 6286 |
| chr8 | 3307132 | 2.28% | 5736 |
| chr9 | 2548848 | 1.84% | 4253 |
| chr10 | 3063746 | 2.29% | 5195 |
| chr11 | 3054979 | 2.26% | 5077 |
| chr12 | 3134438 | 2.35% | 5246 |
| chr13 | 1800022 | 1.57% | 3119 |
| chr14 | 1939740 | 1.81% | 3219 |
| chr15 | 1711606 | 1.68% | 2832 |
| chr16 | 1626943 | 1.80% | 2544 |
| chr17 | 1890719 | 2.27% | 2969 |
| chr18 | 1506798 | 1.87% | 2619 |
| chr19 | 1455507 | 2.48% | 2083 |
| chr20 | 1277949 | 1.98% | 2168 |
| chr21 | 570119 | 1.22% | 936 |
| chr22 | 672172 | 1.32% | 1046 |
| chrX | 2342355 | 1.50% | 3961 |
| chrY | 668 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 108247 | 150 | 3053 | 592.78 | 502 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF518QUX.bed.gz | 4.72 MB | d78e64fb7898028572033d6f9d253d17 |
| ENCFF518QUX.tabix.bed.gz | 1.2 MB | f279e5acd13da47eba732bf3cb397bdf |
| ENCFF518QUX.tabix.bed.gz.tbi | 462.54 KB | e0b5ac762ca524eb19fcb2133f55f27d |
| genomic_resource.yaml | 2.48 KB | d273f89cf2c3e9ef90e67055d79f7db8 |
| statistics/ |