ATAC-seq_ENCSR372IGW
ATAC-seq ENCSR372IGW [biosample_summary="Homo sapiens GM19395"]
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| Id: | ATAC-seq/ENCSR372IGW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR372IGW [biosample_summary="Homo sapiens GM19395"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN771JPT|/analyses/ENCAN771JPT/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF668FJU|/files/ENCFF668FJU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.83589. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF668FJU|/files/ENCFF668FJU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR372IGW | float |
ATAC-seq_ENCSR372IGW |
ATAC-seq ENCSR372IGW [biosample_summary="Homo sapiens GM19395"]
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[1.47, 32.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF518QUX.bed.gz | 4.72 MB | d78e64fb7898028572033d6f9d253d17 |
| ENCFF518QUX.bed.gz.dvc | 101.0 B | cace082b363527443e9825fd1b7d1d32 |
| ENCFF518QUX.tabix.bed.gz | 1.2 MB | f279e5acd13da47eba732bf3cb397bdf |
| ENCFF518QUX.tabix.bed.gz.dvc | 107.0 B | 7988d59d8dd3a29d76ea7ef17c29bdf9 |
| ENCFF518QUX.tabix.bed.gz.tbi | 462.54 KB | e0b5ac762ca524eb19fcb2133f55f27d |
| ENCFF518QUX.tabix.bed.gz.tbi.dvc | 110.0 B | 2010cf8efe480e295fc72e39c222d50e |
| genomic_resource.yaml | 2.48 KB | d273f89cf2c3e9ef90e67055d79f7db8 |
| genomic_resource_original.yaml | 2.42 KB | cd8421f822ca62a31823907fd8aa9d55 |
| statistics/ |