Resource

Id ATAC-seq/ENCSR370QWNcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR370QWN [biosample_summary="Homo sapiens dendritic cell treated with lipopolysaccharide"]
Description
Labels
  • accession: ENCSR370QWN
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with lipopolysaccharide
  • date_created: 2016-10-12T02:41:15.073767+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR370QWN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with lipopolysaccharide
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR370QWN float

ATAC-seq_ENCSR370QWN
ATAC-seq ENCSR370QWN [biosample_summary="Homo sapiens dendritic cell treated with lipopolysaccharide"]
 HISTOGRAM FOR ATAC-seq_ENCSR370QWN [1.51, 35]
n
43,626,911
mean
7.06
sd
3.85

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 436269111.36% 102296
chr1 3806818 1.53% 8774
chr2 3674736 1.52% 8849
chr3 2916668 1.47% 7009
chr4 2204079 1.16% 5332
chr5 2429598 1.34% 5855
chr6 2638782 1.54% 6286
chr7 2408049 1.51% 5687
chr8 2152869 1.48% 5163
chr9 1803575 1.30% 4234
chr10 2143434 1.60% 5118
chr11 2145023 1.59% 5067
chr12 2130619 1.60% 5017
chr13 1119295 0.98% 2710
chr14 1372080 1.28% 3197
chr15 1300869 1.28% 3053
chr16 1431569 1.58% 3175
chr17 1657663 1.99% 3607
chr18 1027945 1.28% 2461
chr19 1519535 2.59% 3001
chr20 1117941 1.73% 2633
chr21 553603 1.19% 1268
chr22 706879 1.39% 1569
chrX 1363078 0.87% 3222
chrY 2204 <0.01% 9
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 102296 150 2502 426.48 351
global segment-length histogram

Files

Filename Size md5
ENCFF427AES.bed.gz 3.3 MB 5f4e566069eec365b15b1588293903d2
ENCFF427AES.tabix.bed.gz 1.1 MB 3e852209a15d860961254a6a89962303
ENCFF427AES.tabix.bed.gz.tbi 450.31 KB 798fb758017319f997b502440f659016
genomic_resource.yaml 1.46 KB 5020d69e4697c99df930a60fecd248a7
statistics/