ATAC-seq_ENCSR368FYV
ATAC-seq ENCSR368FYV [biosample_summary="Homo sapiens HG02852"]
×
| Id: | ATAC-seq/ENCSR368FYV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR368FYV [biosample_summary="Homo sapiens HG02852"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN834ALH|/analyses/ENCAN834ALH/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF978QLZ|/files/ENCFF978QLZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.774332. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF978QLZ|/files/ENCFF978QLZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.85. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR368FYV | float |
ATAC-seq_ENCSR368FYV |
ATAC-seq ENCSR368FYV [biosample_summary="Homo sapiens HG02852"]
|
|
[1.44, 44.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF594ZAI.bed.gz | 4.2 MB | b005a7393ceadc9c20849f8e9bb878ec |
| ENCFF594ZAI.bed.gz.dvc | 101.0 B | f48938fc52c2b291c87a7b4eca4717db |
| ENCFF594ZAI.tabix.bed.gz | 1.22 MB | 4a516e884cd66dbbe407444d5e963313 |
| ENCFF594ZAI.tabix.bed.gz.dvc | 107.0 B | a7e3483701ff1bde2a0d24a4b5d8b0eb |
| ENCFF594ZAI.tabix.bed.gz.tbi | 480.63 KB | b69658f5290dbf619e61f5c9608032ca |
| ENCFF594ZAI.tabix.bed.gz.tbi.dvc | 110.0 B | 748c04713a1c5ce57a8b43bda814be32 |
| genomic_resource.yaml | 2.49 KB | 8b9dafee43612cee47744c40633042cc |
| genomic_resource_original.yaml | 2.42 KB | 5e8994ad4f9b07ed7c45837de84ef162 |
| statistics/ |