Resource
| Id | ATAC-seq/ENCSR368FYV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR368FYV [biosample_summary="Homo sapiens HG02852"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN834ALH|/analyses/ENCAN834ALH/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF978QLZ|/files/ENCFF978QLZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.774332. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF978QLZ|/files/ENCFF978QLZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.85. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR368FYV | float |
ATAC-seq_ENCSR368FYV |
ATAC-seq ENCSR368FYV [biosample_summary="Homo sapiens HG02852"]
|
 |
[1.44, 44.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 59876777 | 1.86% | 113096 |
| chr1 | 5203393 | 2.09% | 9648 |
| chr2 | 5291929 | 2.19% | 10248 |
| chr3 | 4368663 | 2.20% | 8519 |
| chr4 | 3642900 | 1.92% | 7163 |
| chr5 | 3756375 | 2.07% | 7282 |
| chr6 | 4094331 | 2.40% | 7769 |
| chr7 | 3398615 | 2.13% | 6473 |
| chr8 | 3081438 | 2.12% | 5963 |
| chr9 | 2340073 | 1.69% | 4452 |
| chr10 | 2831832 | 2.12% | 5329 |
| chr11 | 2891421 | 2.14% | 5375 |
| chr12 | 2960012 | 2.22% | 5543 |
| chr13 | 1781121 | 1.56% | 3491 |
| chr14 | 1793573 | 1.68% | 3342 |
| chr15 | 1574298 | 1.54% | 2930 |
| chr16 | 1592403 | 1.76% | 2779 |
| chr17 | 1806968 | 2.17% | 3104 |
| chr18 | 1417746 | 1.76% | 2818 |
| chr19 | 1404296 | 2.40% | 2203 |
| chr20 | 1205156 | 1.87% | 2262 |
| chr21 | 571442 | 1.22% | 1034 |
| chr22 | 653587 | 1.29% | 1105 |
| chrX | 2214866 | 1.42% | 4263 |
| chrY | 339 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 113096 | 150 | 3273 | 529.43 | 435 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF594ZAI.bed.gz | 4.2 MB | b005a7393ceadc9c20849f8e9bb878ec |
| ENCFF594ZAI.tabix.bed.gz | 1.22 MB | 4a516e884cd66dbbe407444d5e963313 |
| ENCFF594ZAI.tabix.bed.gz.tbi | 480.63 KB | b69658f5290dbf619e61f5c9608032ca |
| genomic_resource.yaml | 2.49 KB | 8b9dafee43612cee47744c40633042cc |
| statistics/ |