| Id: | ATAC-seq/ENCSR357WQH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR357WQH [biosample_summary="Homo sapiens GM18508"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN986DIA|/analyses/ENCAN986DIA/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: Alignment file {ENCFF932BSQ|/files/ENCFF932BSQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 19995953 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF761RSD|/files/ENCFF761RSD/} (overlap peaks) and {ENCFF085DFN|/files/ENCFF085DFN/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 125878 and 58314 peaks. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR357WQH | float |
ATAC-seq_ENCSR357WQH |
ATAC-seq ENCSR357WQH [biosample_summary="Homo sapiens GM18508"]
|
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[1.46, 30.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF761RSD.bed.gz | 3.02 MB | 4c5d0c5df43c71ca8332cd7e0b0165e8 |
| ENCFF761RSD.bed.gz.dvc | 101.0 B | 9a4099d6d9b9d5f22c00c11d0543fd6a |
| ENCFF761RSD.tabix.bed.gz | 1005.38 KB | e12f1c1e72df680cb1441b6abd7563bb |
| ENCFF761RSD.tabix.bed.gz.dvc | 107.0 B | 1599bd6a68e905ae7ede2973661243b9 |
| ENCFF761RSD.tabix.bed.gz.tbi | 440.29 KB | ae15ed1552e09f7af069dc18908401bd |
| ENCFF761RSD.tabix.bed.gz.tbi.dvc | 110.0 B | 55766d8999d4340e6bd975b04c17de34 |
| genomic_resource.yaml | 2.23 KB | 7f144c5b38b5829eb1bde00015869b3c |
| genomic_resource_original.yaml | 2.16 KB | a9846b4b2a56cd08f6af5567850212d7 |
| statistics/ |