Resource

Id ATAC-seq/ENCSR356KRQcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR356KRQ [biosample_summary="Homo sapiens foreskin keratinocyte male newborn (2-4 days)"]
Description
Labels
  • accession: ENCSR356KRQ
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_1001606/
  • biosample_summary: Homo sapiens foreskin keratinocyte male newborn (2-4 days)
  • date_created: 2016-12-07T00:39:55.496396+00:00
  • date_released: 2017-10-10
  • doi: 10.17989/ENCSR356KRQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: anisogenic
  • simple_biosample_summary: male newborn (2-4 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR356KRQ float

ATAC-seq_ENCSR356KRQ
ATAC-seq ENCSR356KRQ [biosample_summary="Homo sapiens foreskin keratinocyte male newborn (2-4 days)"]
 HISTOGRAM FOR ATAC-seq_ENCSR356KRQ [1.39, 46.6]
n
98,158,526
mean
7.25
sd
4.23

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 981585263.05% 176525
chr1 9262013 3.72% 16527
chr2 8367854 3.46% 15257
chr3 6694391 3.38% 12295
chr4 5621284 2.96% 10506
chr5 5818851 3.21% 10624
chr6 6083206 3.56% 11010
chr7 5353117 3.36% 9603
chr8 4533740 3.12% 8227
chr9 4103206 2.96% 7363
chr10 4814294 3.60% 8612
chr11 5149599 3.81% 9181
chr12 4740799 3.56% 8568
chr13 2540900 2.22% 4658
chr14 3016191 2.82% 5393
chr15 3056481 3.00% 5372
chr16 2967149 3.28% 5063
chr17 3518568 4.23% 6104
chr18 2395213 2.98% 4357
chr19 2409733 4.11% 3922
chr20 2447689 3.80% 4408
chr21 1078157 2.31% 1936
chr22 1411010 2.78% 2412
chrX 2546250 1.63% 4654
chrY 228831 0.40% 473
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 176525 150 3525 556.06 469
global segment-length histogram

Files

Filename Size md5
ENCFF551GBG.bed.gz 6.51 MB c67e5c9269734cf3a4325b10b7e38746
ENCFF551GBG.tabix.bed.gz 1.93 MB 2b0c1d41bf93a7d1b342cbdc0f4abacd
ENCFF551GBG.tabix.bed.gz.tbi 604.09 KB 5807e3bc154656f6ad653818cf1138a4
genomic_resource.yaml 1.43 KB 15b203ae4b5aeda5c3cdea2aaafcccda
statistics/