ATAC-seq_ENCSR355SGJ
ATAC-seq ENCSR355SGJ [biosample_summary="Homo sapiens sigmoid colon tissue female adult (51 years)"]
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| Id: | ATAC-seq/ENCSR355SGJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR355SGJ [biosample_summary="Homo sapiens sigmoid colon tissue female adult (51 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN021SBP|/analyses/ENCAN021SBP/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN021SBP|/analyses/ENCAN021SBP/} has in progress subobject document {01d536a1-9747-4f99-9af4-f310dcea5457|/documents/01d536a1-9747-4f99-9af4-f310dcea5457/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF846PJS|/files/ENCFF846PJS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.12. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF205MPN|/files/ENCFF205MPN/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.848789. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF205MPN|/files/ENCFF205MPN/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR355SGJ | float |
ATAC-seq_ENCSR355SGJ |
ATAC-seq ENCSR355SGJ [biosample_summary="Homo sapiens sigmoid colon tissue female adult (51 years)"]
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[1.5, 26.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF846PJS.bed.gz | 3.25 MB | 49e58c563079fb74c04ff5d64e55d976 |
| ENCFF846PJS.bed.gz.dvc | 101.0 B | da82d5aaee0af02f6964161b8a65762a |
| ENCFF846PJS.tabix.bed.gz | 826.06 KB | 7956a90ff14879f37b376bf506610b7c |
| ENCFF846PJS.tabix.bed.gz.dvc | 106.0 B | 9de3e225bef50778e1aea9c7e494b1d9 |
| ENCFF846PJS.tabix.bed.gz.tbi | 354.75 KB | 008a99b5dd936fb19463a1d12d9710e3 |
| ENCFF846PJS.tabix.bed.gz.tbi.dvc | 110.0 B | df87e489abea02439e3897b62eef6716 |
| genomic_resource.yaml | 3.2 KB | 9d7711bbcf3ffaacc6a7d7985ddd3b9a |
| genomic_resource_original.yaml | 3.1 KB | cec7d1d232d19a6a5078457e3af238fb |
| statistics/ |