Resource

Id ATAC-seq/ENCSR345NVRcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR345NVR [biosample_summary="Homo sapiens HG03460"]
Description
Labels
  • accession: ENCSR345NVR
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0010883/
  • biosample_summary: Homo sapiens HG03460
  • date_created: 2020-11-24T22:02:42.899203+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR345NVR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR345NVR float

ATAC-seq_ENCSR345NVR

ATAC-seq ENCSR345NVR [biosample_summary="Homo sapiens HG03460"]
HISTOGRAM FOR ATAC-seq_ENCSR345NVR [1.55, 38.8]
n
52,068,673
mean
7.17
sd
3.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 520686731.62% 98954
chr1 4694869 1.89% 8801
chr2 4505405 1.86% 8757
chr3 3630291 1.83% 7134
chr4 2972707 1.56% 5930
chr5 3131348 1.72% 6145
chr6 3457965 2.02% 6644
chr7 2919683 1.83% 5623
chr8 2581660 1.78% 5056
chr9 2109292 1.52% 3992
chr10 2553521 1.91% 4847
chr11 2491958 1.84% 4661
chr12 2583328 1.94% 4873
chr13 1417184 1.24% 2752
chr14 1640614 1.53% 3075
chr15 1536280 1.51% 2881
chr16 1499332 1.66% 2624
chr17 1780081 2.14% 3175
chr18 1200291 1.49% 2397
chr19 1398898 2.39% 2198
chr20 1109401 1.72% 2112
chr21 508101 1.09% 922
chr22 654682 1.29% 1121
chrX 1578602 1.01% 2987
chrY 113180 0.20% 247
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 98954 150 3235 526.19 428
global segment-length histogram

Files

Filename Size md5
ENCFF178ZJR.bed.gz 3.76 MB 215484f4539c6853917583ef0492f452
ENCFF178ZJR.tabix.bed.gz 1.08 MB f2fa874005e7265fa1cb32ea7e452390
ENCFF178ZJR.tabix.bed.gz.tbi 438.79 KB eadf616c8dc2e46af05b4b85df4bc910
genomic_resource.yaml 1.28 KB 7d1a50ecb5b96c6aab92eddf41c53081
statistics/