Resource

Id ATAC-seq/ENCSR344ZTMcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR344ZTM [biosample_summary="Homo sapiens thoracic aorta tissue male adult (54 years)"]
Description
Labels
  • accession: ENCSR344ZTM
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001515/
  • biosample_summary: Homo sapiens thoracic aorta tissue male adult (54 years)
  • date_created: 2017-02-22T23:02:50.742816+00:00
  • date_released: 2017-06-21
  • doi: 10.17989/ENCSR344ZTM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR344ZTM float

ATAC-seq_ENCSR344ZTM
ATAC-seq ENCSR344ZTM [biosample_summary="Homo sapiens thoracic aorta tissue male adult (54 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR344ZTM [1.54, 20.9]
n
24,497,694
mean
4.74
sd
1.58

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 244976940.76% 47190
chr1 2380142 0.96% 4503
chr2 1921505 0.79% 3780
chr3 1603145 0.81% 3193
chr4 1157570 0.61% 2338
chr5 1336352 0.74% 2663
chr6 1444729 0.85% 2825
chr7 1199015 0.75% 2294
chr8 1015720 0.70% 2019
chr9 1072500 0.77% 2108
chr10 1179516 0.88% 2348
chr11 1291936 0.96% 2449
chr12 1255953 0.94% 2392
chr13 562329 0.49% 1125
chr14 780369 0.73% 1467
chr15 857060 0.84% 1626
chr16 871382 0.96% 1622
chr17 1147354 1.38% 2091
chr18 483790 0.60% 975
chr19 1048744 1.79% 1759
chr20 603107 0.94% 1203
chr21 307015 0.66% 600
chr22 465439 0.92% 865
chrX 487258 0.31% 897
chrY 25764 0.05% 48
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47190 150 2227 519.13 433
global segment-length histogram

Files

Filename Size md5
ENCFF045YQJ.bed.gz 1.67 MB 4ede340a07bf33309c401703c4803699
ENCFF045YQJ.tabix.bed.gz 530.45 KB 2680bea01b0c4e5960a95cf2cefe9566
ENCFF045YQJ.tabix.bed.gz.tbi 277.44 KB b3d4189cd2b34a489c1c4bc0095d0fbf
genomic_resource.yaml 1.62 KB 9281658e3d64eca83eb0c820e9bd3b32
statistics/