ATAC-seq_ENCSR337UIU
ATAC-seq ENCSR337UIU [biosample_summary="Homo sapiens stomach tissue female adult (53 years)"]
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| Id: | ATAC-seq/ENCSR337UIU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR337UIU [biosample_summary="Homo sapiens stomach tissue female adult (53 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN141HUN|/analyses/ENCAN141HUN/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN141HUN|/analyses/ENCAN141HUN/} has in progress subobject document {fa700224-68b3-4495-a813-bd26f9eb3669|/documents/fa700224-68b3-4495-a813-bd26f9eb3669/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF601PGM|/files/ENCFF601PGM/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.856256. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF601PGM|/files/ENCFF601PGM/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR337UIU | float |
ATAC-seq_ENCSR337UIU |
ATAC-seq ENCSR337UIU [biosample_summary="Homo sapiens stomach tissue female adult (53 years)"]
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[1.4, 35.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF880EHI.bed.gz | 3.65 MB | 9a98cc0ba705b60346fefd6e53da6cbe |
| ENCFF880EHI.bed.gz.dvc | 101.0 B | 9a3976d0485cd1886c7e447a92694777 |
| ENCFF880EHI.tabix.bed.gz | 1.1 MB | e3cc997c0f219afb43e3b0c3d780d22f |
| ENCFF880EHI.tabix.bed.gz.dvc | 107.0 B | 4a7d05475414a7e26b5326117de67901 |
| ENCFF880EHI.tabix.bed.gz.tbi | 424.56 KB | 47a2fd86f2f7ee3b816a487968e2db60 |
| ENCFF880EHI.tabix.bed.gz.tbi.dvc | 110.0 B | f6990ac6896f0bbd919863c081ce5647 |
| genomic_resource.yaml | 2.77 KB | 76bfb1888ffa75f00724f76e29dfabb8 |
| genomic_resource_original.yaml | 2.68 KB | 4d99c10a4131ff11a5c7c608474f7e77 |
| statistics/ |