Resource

Id ATAC-seq/ENCSR335LHScontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR335LHS [biosample_summary="Homo sapiens stimulated activated effector memory CD8-positive, alpha-beta T cell male adult (33 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours"]
Description
Labels
  • accession: ENCSR335LHS
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000668/
  • biosample_summary: Homo sapiens stimulated activated effector memory CD8-positive, alpha-beta T cell male adult (33 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours
  • date_created: 2021-08-25T22:11:21.113351+00:00
  • date_released: 2021-09-09
  • doi: 10.17989/ENCSR335LHS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (33 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR335LHS float

ATAC-seq_ENCSR335LHS
ATAC-seq ENCSR335LHS [biosample_summary="Homo sapiens stimulated activated effector memory CD8-positive, alpha-beta T cell male adult (33 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR335LHS [1.35, 41.5]
n
75,450,165
mean
6.84
sd
4.83

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 754501652.35% 141162
chr1 7061288 2.84% 13078
chr2 6336091 2.62% 12099
chr3 5017408 2.53% 9627
chr4 3429063 1.80% 6561
chr5 4209549 2.32% 8002
chr6 4876433 2.85% 9260
chr7 4002325 2.51% 7403
chr8 3275249 2.26% 6199
chr9 2997985 2.17% 5616
chr10 3846632 2.87% 7242
chr11 3730454 2.76% 6950
chr12 3697778 2.77% 6869
chr13 2041888 1.79% 3931
chr14 2411337 2.25% 4563
chr15 2379112 2.33% 4537
chr16 2462946 2.73% 4390
chr17 3197680 3.84% 5679
chr18 1671844 2.08% 3258
chr19 2728802 4.66% 4537
chr20 1881837 2.92% 3550
chr21 983809 2.11% 1814
chr22 1453453 2.86% 2576
chrX 1635653 1.05% 3157
chrY 121549 0.21% 264
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 141162 150 2951 534.49 440
global segment-length histogram

Files

Filename Size md5
ENCFF547LIL.bed.gz 5.1 MB 5642fcfd4b711300153062c3bd574449
ENCFF547LIL.tabix.bed.gz 1.53 MB e466761c044535fe10e4055e36fe395e
ENCFF547LIL.tabix.bed.gz.tbi 520.35 KB 1e218c18ea809e4905c33778a4af729f
genomic_resource.yaml 2.41 KB 874633055f19404289be29c7c8a473f8
statistics/