ATAC-seq_ENCSR335JVB
ATAC-seq ENCSR335JVB [biosample_summary="Homo sapiens GM19372"]
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| Id: | ATAC-seq/ENCSR335JVB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR335JVB [biosample_summary="Homo sapiens GM19372"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN538AQP|/analyses/ENCAN538AQP/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: Alignment file {ENCFF301DFZ|/files/ENCFF301DFZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 24491676 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF301DFZ|/files/ENCFF301DFZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.857335. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF301DFZ|/files/ENCFF301DFZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR335JVB | float |
ATAC-seq_ENCSR335JVB |
ATAC-seq ENCSR335JVB [biosample_summary="Homo sapiens GM19372"]
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[1.58, 40.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF546KKI.bed.gz | 3.32 MB | e609decc41c465b9c8d6a3b1bb7f9471 |
| ENCFF546KKI.bed.gz.dvc | 101.0 B | 9ec342882ff85ddd0ce86307c47477d8 |
| ENCFF546KKI.tabix.bed.gz | 949.56 KB | deb8f3a7b498d45f25f69fb0cb384c0f |
| ENCFF546KKI.tabix.bed.gz.dvc | 106.0 B | 53dc233995537a4e33e41cbcab6c51bf |
| ENCFF546KKI.tabix.bed.gz.tbi | 398.06 KB | 35ea500677e57880315a0c78dbf5ec4b |
| ENCFF546KKI.tabix.bed.gz.tbi.dvc | 110.0 B | 99b5b91293349273465220a264a04a5c |
| genomic_resource.yaml | 2.86 KB | 0dd52208d453df627f7b2651c65432c5 |
| genomic_resource_original.yaml | 2.79 KB | 800b3b4e7d0f974bff1cf71d80aa83c8 |
| statistics/ |