ATAC-seq_ENCSR331JFZ
ATAC-seq ENCSR331JFZ [biosample_summary="Homo sapiens HG03575"]
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| Id: | ATAC-seq/ENCSR331JFZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR331JFZ [biosample_summary="Homo sapiens HG03575"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_error: Alignment file {ENCFF632MBC|/files/ENCFF632MBC/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 12592755 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_internal_action: Released analysis {ENCAN086FNR|/analyses/ENCAN086FNR/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF089MEL|/files/ENCFF089MEL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.19. audit_not_compliant: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF089MEL|/files/ENCFF089MEL/} (overlap peaks) and {ENCFF027KMZ|/files/ENCFF027KMZ/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 98877 and 38973 peaks. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR331JFZ | float |
ATAC-seq_ENCSR331JFZ |
ATAC-seq ENCSR331JFZ [biosample_summary="Homo sapiens HG03575"]
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[1.77, 27.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF089MEL.bed.gz | 2.36 MB | 0b8a63df89abe0df142ee714f9fc67b2 |
| ENCFF089MEL.bed.gz.dvc | 101.0 B | a38db098b57aa1d76489bfdd59478ec0 |
| ENCFF089MEL.tabix.bed.gz | 841.74 KB | 53359925dd4e94e91bec5d7516e0cee5 |
| ENCFF089MEL.tabix.bed.gz.dvc | 106.0 B | 6728d16ba0591d06e4e4e6e40189e94b |
| ENCFF089MEL.tabix.bed.gz.tbi | 402.74 KB | fbddead1fcb8b08b16a550493a13a319 |
| ENCFF089MEL.tabix.bed.gz.tbi.dvc | 110.0 B | 594f525850392d83799b048e4ab20994 |
| genomic_resource.yaml | 2.65 KB | 379eff02e59967cc4c9afedb14f8d11e |
| genomic_resource_original.yaml | 2.58 KB | 66fb39c69cd826ffd95f6eaf227e426f |
| statistics/ |