Resource
| Id | ATAC-seq/ENCSR330WUK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary |
ATAC-seq ENCSR330WUK [biosample_summary="Homo sapiens left cardiac atrium tissue male adult (60 years)"]
|
| Description |
status: released biological_replicates: Rep 1 summary: male adult (60 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN658ZKM|/analyses/ENCAN658ZKM/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: Alignment file {ENCFF717CMQ|/files/ENCFF717CMQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 19630077 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF717CMQ|/files/ENCFF717CMQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.834079. audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF851UZI|/files/ENCFF851UZI/} (overlap peaks) and {ENCFF720GJU|/files/ENCFF720GJU/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 140332 and 63986 peaks. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR330WUK | float |
ATAC-seq_ENCSR330WUK |
ATAC-seq ENCSR330WUK [biosample_summary="Homo sapiens left cardiac atrium tissue male adult (60 years)"]
|
 |
[1.56, 34.9] |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF851UZI.bed.gz | 3.38 MB | 8cc5e0e28d59c9cb059639d9229e1abc |
| ENCFF851UZI.bed.gz.dvc | 101.0 B | bf1fd5462b8f4c98bbe2c19d806d709d |
| ENCFF851UZI.tabix.bed.gz | 1.03 MB | a45d70c129581f02338b5574789938ec |
| ENCFF851UZI.tabix.bed.gz.dvc | 107.0 B | 101d32a8b36675ba91574792c2c56afa |
| ENCFF851UZI.tabix.bed.gz.tbi | 416.8 KB | 6b781a93d9eb67b80a9a094bf4377600 |
| ENCFF851UZI.tabix.bed.gz.tbi.dvc | 110.0 B | bc0bfa1d0fbb44c507252494e8b26b2a |
| genomic_resource.yaml | 3.06 KB | b39dd326f1dfd9b75098035289fd88f4 |
| statistics/ |