Resource
| Id | ATAC-seq/ENCSR330WUK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR330WUK [biosample_summary="Homo sapiens left cardiac atrium tissue male adult (60 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (60 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN658ZKM|/analyses/ENCAN658ZKM/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: Alignment file {ENCFF717CMQ|/files/ENCFF717CMQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 19630077 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF717CMQ|/files/ENCFF717CMQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.834079. audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF851UZI|/files/ENCFF851UZI/} (overlap peaks) and {ENCFF720GJU|/files/ENCFF720GJU/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 140332 and 63986 peaks. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR330WUK | float |
ATAC-seq_ENCSR330WUK |
ATAC-seq ENCSR330WUK [biosample_summary="Homo sapiens left cardiac atrium tissue male adult (60 years)"]
|
 |
[1.56, 34.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 48265102 | 1.50% | 94859 |
| chr1 | 4735524 | 1.90% | 9206 |
| chr2 | 3791012 | 1.57% | 7619 |
| chr3 | 3085465 | 1.56% | 6216 |
| chr4 | 1988092 | 1.05% | 4059 |
| chr5 | 2591441 | 1.43% | 5280 |
| chr6 | 2665808 | 1.56% | 5328 |
| chr7 | 2376607 | 1.49% | 4768 |
| chr8 | 2095084 | 1.44% | 4256 |
| chr9 | 2133947 | 1.54% | 4184 |
| chr10 | 2464336 | 1.84% | 4916 |
| chr11 | 2567656 | 1.90% | 4951 |
| chr12 | 2330298 | 1.75% | 4563 |
| chr13 | 1160005 | 1.01% | 2379 |
| chr14 | 1466765 | 1.37% | 2873 |
| chr15 | 1748540 | 1.71% | 3395 |
| chr16 | 1743468 | 1.93% | 3269 |
| chr17 | 2331952 | 2.80% | 4277 |
| chr18 | 1006049 | 1.25% | 2110 |
| chr19 | 1884757 | 3.22% | 3232 |
| chr20 | 1331828 | 2.07% | 2677 |
| chr21 | 614288 | 1.32% | 1207 |
| chr22 | 1083554 | 2.13% | 2075 |
| chrX | 1022572 | 0.66% | 1918 |
| chrY | 46054 | 0.08% | 101 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 94859 | 150 | 2816 | 508.81 | 420 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF851UZI.bed.gz | 3.38 MB | 8cc5e0e28d59c9cb059639d9229e1abc |
| ENCFF851UZI.tabix.bed.gz | 1.03 MB | a45d70c129581f02338b5574789938ec |
| ENCFF851UZI.tabix.bed.gz.tbi | 416.8 KB | 6b781a93d9eb67b80a9a094bf4377600 |
| genomic_resource.yaml | 3.06 KB | b39dd326f1dfd9b75098035289fd88f4 |
| statistics/ |