ATAC-seq_ENCSR325NFE
ATAC-seq ENCSR325NFE [biosample_summary="Homo sapiens bile duct tissue female child (16 years)"]
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| Id: | ATAC-seq/ENCSR325NFE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR325NFE [biosample_summary="Homo sapiens bile duct tissue female child (16 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female child (16 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN017XQA|/analyses/ENCAN017XQA/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF201LZO|/files/ENCFF201LZO/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.17. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF822VZJ|/files/ENCFF822VZJ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.816873. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF822VZJ|/files/ENCFF822VZJ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.83. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR325NFE | float |
ATAC-seq_ENCSR325NFE |
ATAC-seq ENCSR325NFE [biosample_summary="Homo sapiens bile duct tissue female child (16 years)"]
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[1.29, 29.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF201LZO.bed.gz | 5.42 MB | 0b5c83dddde7859390722ecf3ec205ef |
| ENCFF201LZO.bed.gz.dvc | 101.0 B | 040d95b018b8c62e6a56bcdde9c9b49d |
| ENCFF201LZO.tabix.bed.gz | 1.52 MB | a6461d0172c4f2e3171ff0f1d9a24377 |
| ENCFF201LZO.tabix.bed.gz.dvc | 107.0 B | d0269446d2a77289b9ad50b68512b0bf |
| ENCFF201LZO.tabix.bed.gz.tbi | 478.18 KB | 69fb855db7d465cf16367d725827ef3f |
| ENCFF201LZO.tabix.bed.gz.tbi.dvc | 110.0 B | 882e7bb10225a7df854fa7fa13783c24 |
| genomic_resource.yaml | 3.33 KB | 824b57c69b95720b1b0301192382c13f |
| genomic_resource_original.yaml | 3.23 KB | bd484376202d345bb29c117bc1bb5076 |
| statistics/ |