ATAC-seq_ENCSR315QWI
ATAC-seq ENCSR315QWI [biosample_summary="Homo sapiens GM21737"]
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| Id: | ATAC-seq/ENCSR315QWI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR315QWI [biosample_summary="Homo sapiens GM21737"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN983NFZ|/analyses/ENCAN983NFZ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF687END|/files/ENCFF687END/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.880654. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF687END|/files/ENCFF687END/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR315QWI | float |
ATAC-seq_ENCSR315QWI |
ATAC-seq ENCSR315QWI [biosample_summary="Homo sapiens GM21737"]
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[1.46, 37] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF529WCI.bed.gz | 3.32 MB | 6b4cbd38b8e35db7e1a1c088cb9bbcfd |
| ENCFF529WCI.bed.gz.dvc | 101.0 B | d3559b5efe1c9123a6eae7487bec5ec1 |
| ENCFF529WCI.tabix.bed.gz | 971.45 KB | cdf6975143a3b5b5221040ff83adf9f1 |
| ENCFF529WCI.tabix.bed.gz.dvc | 106.0 B | e2247e70a928e52cac466be5c046ae88 |
| ENCFF529WCI.tabix.bed.gz.tbi | 392.29 KB | 2103a6fbe194a2950bc0b99bbd4db2cc |
| ENCFF529WCI.tabix.bed.gz.tbi.dvc | 110.0 B | a968eda581e6386a12cb68e9e1a82936 |
| genomic_resource.yaml | 2.49 KB | 2f9c9593f9794f70e73e85f5f9686b3d |
| genomic_resource_original.yaml | 2.42 KB | 91d133a871ea0d20292462b73f307cac |
| statistics/ |