ATAC-seq_ENCSR312UCH
ATAC-seq ENCSR312UCH [biosample_summary="Homo sapiens GM18519"]
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| Id: | ATAC-seq/ENCSR312UCH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR312UCH [biosample_summary="Homo sapiens GM18519"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN830RWE|/analyses/ENCAN830RWE/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF215TCL|/files/ENCFF215TCL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.20. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF603MOL|/files/ENCFF603MOL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.845045. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF603MOL|/files/ENCFF603MOL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR312UCH | float |
ATAC-seq_ENCSR312UCH |
ATAC-seq ENCSR312UCH [biosample_summary="Homo sapiens GM18519"]
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[1.61, 31.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF215TCL.bed.gz | 3.24 MB | 92250b6502bf08a97b40e8dbf22c3b44 |
| ENCFF215TCL.bed.gz.dvc | 101.0 B | db89bec52580752fe7f1e9839c551387 |
| ENCFF215TCL.tabix.bed.gz | 1.02 MB | ca9fa3d0abe1f237e8d9ce53aaa803b2 |
| ENCFF215TCL.tabix.bed.gz.dvc | 107.0 B | 7f10d9a0e115d83bbe64df1afaa0b543 |
| ENCFF215TCL.tabix.bed.gz.tbi | 436.82 KB | cfac1dfff6acaf535a4863113ea32cdc |
| ENCFF215TCL.tabix.bed.gz.tbi.dvc | 110.0 B | 6c301539719b45220df32636f92c366e |
| genomic_resource.yaml | 2.91 KB | e0e12caca07961c05dc1c7dc8e93a2a8 |
| genomic_resource_original.yaml | 2.84 KB | 561aed62b7c15d0445b3c55fb645864d |
| statistics/ |