ATAC-seq_ENCSR310UDW
ATAC-seq ENCSR310UDW [biosample_summary="Homo sapiens left cardiac atrium tissue male adult (40 years)"]
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| Id: | ATAC-seq/ENCSR310UDW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR310UDW [biosample_summary="Homo sapiens left cardiac atrium tissue male adult (40 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (40 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN565CZO|/analyses/ENCAN565CZO/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF915LJI|/files/ENCFF915LJI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.824082. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF915LJI|/files/ENCFF915LJI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR310UDW | float |
ATAC-seq_ENCSR310UDW |
ATAC-seq ENCSR310UDW [biosample_summary="Homo sapiens left cardiac atrium tissue male adult (40 years)"]
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[1.38, 38.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF241UNR.bed.gz | 6.6 MB | 67dba813d967fd5eed78e65cfc12e47e |
| ENCFF241UNR.bed.gz.dvc | 101.0 B | efbbc5fa3ba11d4f89778e6bde8fef8f |
| ENCFF241UNR.tabix.bed.gz | 1.91 MB | 5873f9fc7e50374d8aec2b451afc6a40 |
| ENCFF241UNR.tabix.bed.gz.dvc | 107.0 B | 1a2ad4a7191a1270a6324238e1c2fc63 |
| ENCFF241UNR.tabix.bed.gz.tbi | 529.88 KB | 22d7c67778c75529a36814c78cb3d3e0 |
| ENCFF241UNR.tabix.bed.gz.tbi.dvc | 110.0 B | 0f27e08a0404f7d528a108c6441f4287 |
| genomic_resource.yaml | 2.59 KB | 7fd99fcbd0b3f3f4b97459c2632624ed |
| genomic_resource_original.yaml | 2.48 KB | ff6530ed3facd1f18f08f92b35d616f3 |
| statistics/ |