Resource
| Id | ATAC-seq/ENCSR310UDW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR310UDW [biosample_summary="Homo sapiens left cardiac atrium tissue male adult (40 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (40 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN565CZO|/analyses/ENCAN565CZO/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF915LJI|/files/ENCFF915LJI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.824082. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF915LJI|/files/ENCFF915LJI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.86. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR310UDW | float |
ATAC-seq_ENCSR310UDW |
ATAC-seq ENCSR310UDW [biosample_summary="Homo sapiens left cardiac atrium tissue male adult (40 years)"]
|
 |
[1.38, 38.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 106142620 | 3.30% | 175267 |
| chr1 | 10339055 | 4.15% | 16826 |
| chr2 | 8624536 | 3.56% | 14553 |
| chr3 | 6829081 | 3.44% | 11816 |
| chr4 | 4672235 | 2.46% | 8327 |
| chr5 | 5713427 | 3.15% | 9842 |
| chr6 | 6090370 | 3.57% | 10469 |
| chr7 | 5366661 | 3.37% | 8985 |
| chr8 | 4675858 | 3.22% | 8065 |
| chr9 | 4612134 | 3.33% | 7578 |
| chr10 | 5361875 | 4.01% | 8982 |
| chr11 | 5535741 | 4.10% | 8792 |
| chr12 | 5041952 | 3.78% | 8376 |
| chr13 | 2651307 | 2.32% | 4626 |
| chr14 | 3281626 | 3.07% | 5372 |
| chr15 | 3840376 | 3.77% | 6309 |
| chr16 | 3627418 | 4.02% | 5512 |
| chr17 | 4869821 | 5.85% | 7231 |
| chr18 | 2373272 | 2.95% | 4227 |
| chr19 | 3632345 | 6.20% | 4907 |
| chr20 | 3015459 | 4.68% | 4883 |
| chr21 | 1411429 | 3.02% | 2267 |
| chr22 | 2300697 | 4.53% | 3500 |
| chrX | 2161682 | 1.39% | 3595 |
| chrY | 114263 | 0.20% | 227 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 175267 | 150 | 4558 | 605.61 | 479 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF241UNR.bed.gz | 6.6 MB | 67dba813d967fd5eed78e65cfc12e47e |
| ENCFF241UNR.tabix.bed.gz | 1.91 MB | 5873f9fc7e50374d8aec2b451afc6a40 |
| ENCFF241UNR.tabix.bed.gz.tbi | 529.88 KB | 22d7c67778c75529a36814c78cb3d3e0 |
| genomic_resource.yaml | 2.59 KB | 7fd99fcbd0b3f3f4b97459c2632624ed |
| statistics/ |