ATAC-seq_ENCSR310RJN
ATAC-seq ENCSR310RJN [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)"]
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| Id: | ATAC-seq/ENCSR310RJN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR310RJN [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (43 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN927JTE|/analyses/ENCAN927JTE/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN927JTE|/analyses/ENCAN927JTE/} has in progress subobject document {ec82a6c8-6965-4f26-986b-36e1d211cfed|/documents/ec82a6c8-6965-4f26-986b-36e1d211cfed/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF804KIW|/files/ENCFF804KIW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.81495. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF804KIW|/files/ENCFF804KIW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR310RJN | float |
ATAC-seq_ENCSR310RJN |
ATAC-seq ENCSR310RJN [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)"]
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[1.24, 36.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF568NPG.bed.gz | 5.03 MB | 5c032194fa4a1316a47ab9cb0e0ffc31 |
| ENCFF568NPG.bed.gz.dvc | 101.0 B | a30a2b6bd2a5eaf9d3bce63bc4cbadbd |
| ENCFF568NPG.tabix.bed.gz | 1.47 MB | 84edc6ec9830594c31f22e641296a1bc |
| ENCFF568NPG.tabix.bed.gz.dvc | 107.0 B | 6260f77f25537e30b8d29beddf8bb3fb |
| ENCFF568NPG.tabix.bed.gz.tbi | 463.87 KB | 598c7aebf5d2be56a21e6f97f83f5d6b |
| ENCFF568NPG.tabix.bed.gz.tbi.dvc | 110.0 B | 3a503ca961eb6f95dd926f8325a7fbef |
| genomic_resource.yaml | 2.8 KB | e8508f14647fdabfbc21d8659597d553 |
| genomic_resource_original.yaml | 2.69 KB | 74812c7420c405b7c9e31e0d63c7da3a |
| statistics/ |