Resource

Id ATAC-seq/ENCSR308HPZcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR308HPZ [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (54 years)"]
Description
Labels
  • accession: ENCSR308HPZ
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0011907/
  • biosample_summary: Homo sapiens gastrocnemius medialis tissue male adult (54 years)
  • date_created: 2016-11-01T03:08:05.802755+00:00
  • date_released: 2016-10-31
  • doi: 10.17989/ENCSR308HPZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR308HPZ float

ATAC-seq_ENCSR308HPZ
ATAC-seq ENCSR308HPZ [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (54 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR308HPZ [1.31, 32.2]
n
55,969,792
mean
6.58
sd
3.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 559697921.74% 106013
chr1 5575838 2.24% 10540
chr2 4521856 1.87% 8817
chr3 3684447 1.86% 7261
chr4 2189601 1.15% 4334
chr5 2783338 1.53% 5483
chr6 3268185 1.91% 6356
chr7 2771241 1.74% 5303
chr8 2344160 1.62% 4549
chr9 2428462 1.75% 4590
chr10 2795641 2.09% 5466
chr11 2892593 2.14% 5280
chr12 2609141 1.96% 4897
chr13 1237966 1.08% 2449
chr14 1767599 1.65% 3319
chr15 2019771 1.98% 3832
chr16 2116176 2.34% 3765
chr17 2864936 3.44% 5043
chr18 1096167 1.36% 2203
chr19 2078055 3.55% 3383
chr20 1498967 2.33% 2841
chr21 684443 1.47% 1314
chr22 1321686 2.60% 2324
chrX 1303753 0.84% 2418
chrY 115770 0.20% 246
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 106013 150 2964 527.95 408
global segment-length histogram

Files

Filename Size md5
ENCFF849FQV.bed.gz 4.32 MB 2622853efe31cb654dcdf57a234da8d1
ENCFF849FQV.tabix.bed.gz 1.16 MB 8d0d15ffaff29b4365da14f749c2d57e
ENCFF849FQV.tabix.bed.gz.tbi 391.03 KB c56157296e762cd99e1e2c1ba4c1c3e0
genomic_resource.yaml 1.65 KB eacbdce66930c6d03b955e8f0e146bc5
statistics/