ATAC-seq_ENCSR305XRF
ATAC-seq ENCSR305XRF [biosample_summary="Homo sapiens HG03175"]
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| Id: | ATAC-seq/ENCSR305XRF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR305XRF [biosample_summary="Homo sapiens HG03175"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN790UCY|/analyses/ENCAN790UCY/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN790UCY|/analyses/ENCAN790UCY/} has in progress subobject document {fa63ac9e-3020-4401-989c-a412e2e542c8|/documents/fa63ac9e-3020-4401-989c-a412e2e542c8/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF963YZH|/files/ENCFF963YZH/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.829492. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF963YZH|/files/ENCFF963YZH/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.83. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR305XRF | float |
ATAC-seq_ENCSR305XRF |
ATAC-seq ENCSR305XRF [biosample_summary="Homo sapiens HG03175"]
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[1.49, 30.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF914TAP.bed.gz | 4.24 MB | b85b9909528983647c2ee324e788686e |
| ENCFF914TAP.bed.gz.dvc | 101.0 B | 5752c86215c87626f231fbae2662dbd3 |
| ENCFF914TAP.tabix.bed.gz | 1.21 MB | 3597269a46e1ea6f683da67a37ba05ba |
| ENCFF914TAP.tabix.bed.gz.dvc | 107.0 B | a1084d4c68b41a5de0fa4bbf20b49ad1 |
| ENCFF914TAP.tabix.bed.gz.tbi | 476.3 KB | 348de1159c453442a4d770033e24478b |
| ENCFF914TAP.tabix.bed.gz.tbi.dvc | 110.0 B | d05df075b1268d50dd5496fcd98915ce |
| genomic_resource.yaml | 2.71 KB | db8945c61d026c0d4ec0659bc6814800 |
| genomic_resource_original.yaml | 2.64 KB | d4ebd1f55c6faed133e6cf18f45bed77 |
| statistics/ |