Resource

Id ATAC-seq/ENCSR305QTEcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR305QTE [biosample_summary="Homo sapiens natural killer cell male adult (47 years)"]
Description
Labels
  • accession: ENCSR305QTE
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000623/
  • biosample_summary: Homo sapiens natural killer cell male adult (47 years)
  • date_created: 2021-07-14T20:44:12.505180+00:00
  • date_released: 2021-09-09
  • doi: 10.17989/ENCSR305QTE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (47 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR305QTE float

ATAC-seq_ENCSR305QTE
ATAC-seq ENCSR305QTE [biosample_summary="Homo sapiens natural killer cell male adult (47 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR305QTE [1.33, 38.4]
n
39,369,753
mean
6.99
sd
4.62

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 393697531.22% 78954
chr1 3843685 1.54% 7636
chr2 3112163 1.28% 6393
chr3 2272872 1.15% 4652
chr4 1558234 0.82% 3220
chr5 1921063 1.06% 3944
chr6 2291910 1.34% 4640
chr7 2047302 1.28% 4177
chr8 1604201 1.11% 3250
chr9 1639436 1.18% 3306
chr10 1918964 1.43% 3895
chr11 1911770 1.42% 3869
chr12 1902463 1.43% 3761
chr13 935242 0.82% 1910
chr14 1323290 1.24% 2636
chr15 1359425 1.33% 2754
chr16 1525056 1.69% 2951
chr17 2017437 2.42% 3879
chr18 809127 1.01% 1708
chr19 1864094 3.18% 3466
chr20 1122358 1.74% 2296
chr21 567790 1.22% 1094
chr22 917096 1.80% 1799
chrX 866949 0.56% 1643
chrY 37826 0.07% 75
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 78954 150 2833 498.64 406
global segment-length histogram

Files

Filename Size md5
ENCFF040SJW.bed.gz 2.98 MB 43272e4ff502a33e866c62c9c9193c93
ENCFF040SJW.tabix.bed.gz 889.14 KB 7f93d373dcd7076978f96af27ea8f45b
ENCFF040SJW.tabix.bed.gz.tbi 378.71 KB f799fcebbc00dee92ea25478b696acec
genomic_resource.yaml 1.42 KB 53788deb1b8997be5fcf6f43bcf95085
statistics/