Resource

Id ATAC-seq/ENCSR303PWBcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR303PWB [biosample_summary="Homo sapiens esophagus mucosa tissue female adult (47 years)"]
Description
Labels
  • accession: ENCSR303PWB
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002469/
  • biosample_summary: Homo sapiens esophagus mucosa tissue female adult (47 years)
  • date_created: 2019-05-29T07:52:50.244832+00:00
  • date_released: 2020-10-08
  • doi: 10.17989/ENCSR303PWB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (47 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR303PWB float

ATAC-seq_ENCSR303PWB
ATAC-seq ENCSR303PWB [biosample_summary="Homo sapiens esophagus mucosa tissue female adult (47 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR303PWB [1.21, 29]
n
76,005,204
mean
4.5
sd
2.37

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 760052042.36% 141022
chr1 7544131 3.03% 13776
chr2 5894583 2.43% 11283
chr3 4564111 2.30% 8863
chr4 3202371 1.68% 6436
chr5 3704709 2.04% 7209
chr6 4422120 2.59% 8468
chr7 3646405 2.29% 6886
chr8 3075368 2.12% 5986
chr9 3364077 2.43% 6218
chr10 3500385 2.62% 6657
chr11 3846632 2.85% 7045
chr12 3645522 2.74% 6754
chr13 1613295 1.41% 3114
chr14 2438966 2.28% 4436
chr15 2705391 2.65% 4876
chr16 2981169 3.30% 5276
chr17 3988129 4.79% 6746
chr18 1535580 1.91% 3056
chr19 3216712 5.49% 4972
chr20 2237288 3.47% 4122
chr21 1184257 2.54% 2181
chr22 1890371 3.72% 3170
chrX 1802077 1.15% 3486
chrY 1555 <0.01% 6
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 141022 150 3376 538.96 420
global segment-length histogram

Files

Filename Size md5
ENCFF884ALU.bed.gz 5.2 MB c90b6d16d9353d87a1be9d5d78668fb0
ENCFF884ALU.tabix.bed.gz 1.53 MB 448e9de10df2232508d2ac9adc42320d
ENCFF884ALU.tabix.bed.gz.tbi 474.47 KB 7b74770629f314081cb60934834f8894
genomic_resource.yaml 1.64 KB 6a2889db090e689b33d3d168a057450d
statistics/