Resource

Id ATAC-seq/ENCSR302PTBcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR302PTB [biosample_summary="Homo sapiens stimulated activated memory\ \ B cell male adult (40 years) treated with 10 \u03BCg/mL anti-IgM for 72 hours,\ \ 1 \u03BCg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours"]
Description
Labels
  • accession: ENCSR302PTB
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000662/
  • biosample_summary: Homo sapiens stimulated activated memory B cell male adult (40 years) treated with 10 μg/mL anti-IgM for 72 hours, 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours
  • date_created: 2021-08-25T22:01:33.798668+00:00
  • date_released: 2021-09-09
  • doi: 10.17989/ENCSR302PTB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (40 years) treated with 10 μg/mL anti-IgM for 72 hours, 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR302PTB float

ATAC-seq_ENCSR302PTB
ATAC-seq ENCSR302PTB [biosample_summary="Homo sapiens stimulated activated memory\ \ B cell male adult (40 years) treated with 10 \u03BCg/mL anti-IgM for 72 hours,\ \ 1 \u03BCg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR302PTB [1.38, 32.3]
n
62,156,333
mean
5.47
sd
3.41

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 621563331.93% 114242
chr1 5775819 2.32% 10575
chr2 5062180 2.09% 9505
chr3 3975938 2.01% 7560
chr4 2863096 1.51% 5466
chr5 3400115 1.87% 6511
chr6 3695985 2.16% 6868
chr7 3360265 2.11% 6206
chr8 2866317 1.97% 5473
chr9 2619825 1.89% 4880
chr10 2956139 2.21% 5589
chr11 3013168 2.23% 5480
chr12 2970026 2.23% 5393
chr13 1587538 1.39% 3016
chr14 1931942 1.80% 3481
chr15 2012263 1.97% 3758
chr16 2134159 2.36% 3720
chr17 2768675 3.33% 4668
chr18 1509953 1.88% 2963
chr19 2554976 4.36% 4115
chr20 1699843 2.64% 3130
chr21 869057 1.86% 1534
chr22 1365811 2.69% 2345
chrX 1111900 0.71% 1907
chrY 51343 0.09% 99
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 114242 150 3383 544.08 442
global segment-length histogram

Files

Filename Size md5
ENCFF178DTJ.bed.gz 4.24 MB 3df045a3d73b7b89335d4f6136cabd3e
ENCFF178DTJ.tabix.bed.gz 1.24 MB 917794fd695b6ed8ff0c053533f1c83c
ENCFF178DTJ.tabix.bed.gz.tbi 486.87 KB 1f7f298b42bc3907086547c59d0515dc
genomic_resource.yaml 2.14 KB 1706f0035c3f580fda4caff1f47f6609
statistics/