ATAC-seq_ENCSR299LSN
ATAC-seq ENCSR299LSN [biosample_summary="Homo sapiens T-cell male adult (42 years)"]
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| Id: | ATAC-seq/ENCSR299LSN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR299LSN [biosample_summary="Homo sapiens T-cell male adult (42 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (42 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN000LOD|/analyses/ENCAN000LOD/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: Alignment file {ENCFF580RMB|/files/ENCFF580RMB/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline has 22233789 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF867TMP|/files/ENCFF867TMP/} (overlap peaks) and {ENCFF904ZLF|/files/ENCFF904ZLF/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline have 105361 and 69623 peaks. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR299LSN | float |
ATAC-seq_ENCSR299LSN |
ATAC-seq ENCSR299LSN [biosample_summary="Homo sapiens T-cell male adult (42 years)"]
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[1.52, 38] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF867TMP.bed.gz | 2.49 MB | 7c482749f4592d2527ae17c29efd940f |
| ENCFF867TMP.bed.gz.dvc | 101.0 B | ed0cfea1865d7bc8dc8567682014c31a |
| ENCFF867TMP.tabix.bed.gz | 704.58 KB | c5f9cdd933c11acc298f0502f1441064 |
| ENCFF867TMP.tabix.bed.gz.dvc | 106.0 B | bf84d69352d66312c8194a2b0921c6e7 |
| ENCFF867TMP.tabix.bed.gz.tbi | 310.84 KB | 762c21666c286f7bbbff4915f7dda8bf |
| ENCFF867TMP.tabix.bed.gz.tbi.dvc | 110.0 B | 480638909a57d3d6930c54ae4521cfca |
| genomic_resource.yaml | 2.29 KB | 1b80ef75d6f61478e636aff5cdecb695 |
| genomic_resource_original.yaml | 2.2 KB | b5419a930a0a85e54769505aa6243447 |
| statistics/ |