ATAC-seq_ENCSR297VGU
ATAC-seq ENCSR297VGU [biosample_summary="Homo sapiens kidney tissue female adult (47 years)"]
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| Id: | ATAC-seq/ENCSR297VGU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR297VGU [biosample_summary="Homo sapiens kidney tissue female adult (47 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (47 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN588LOR|/analyses/ENCAN588LOR/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF845OZO|/files/ENCFF845OZO/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.20. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF136AEE|/files/ENCFF136AEE/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.875879. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF136AEE|/files/ENCFF136AEE/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR297VGU | float |
ATAC-seq_ENCSR297VGU |
ATAC-seq ENCSR297VGU [biosample_summary="Homo sapiens kidney tissue female adult (47 years)"]
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[1.4, 37] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF845OZO.bed.gz | 5.67 MB | d6176244150fc7caa3fba648f9cd483e |
| ENCFF845OZO.bed.gz.dvc | 101.0 B | 8c3c5ad661c945a498ae187f44874c09 |
| ENCFF845OZO.tabix.bed.gz | 1.62 MB | 47778933798ac4917fcf875e2f4000ed |
| ENCFF845OZO.tabix.bed.gz.dvc | 107.0 B | 475d19dd2725f33839c6500637ea6ce5 |
| ENCFF845OZO.tabix.bed.gz.tbi | 506.76 KB | d0be0ccc83d12bfe11c8f00919b4ead4 |
| ENCFF845OZO.tabix.bed.gz.tbi.dvc | 110.0 B | 350af22d0c31a6f0d680c5b485f8c5e2 |
| genomic_resource.yaml | 3.32 KB | f25be627e05291e50bd93909c8ec427d |
| genomic_resource_original.yaml | 3.23 KB | 1d258be53f19712e523b0c3e2fe29f9a |
| statistics/ |