ATAC-seq_ENCSR291GJU
ATAC-seq ENCSR291GJU [biosample_summary="Homo sapiens HepG2"]
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| Id: | ATAC-seq/ENCSR291GJU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR291GJU [biosample_summary="Homo sapiens HepG2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2, Rep 3 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN877DUG|/analyses/ENCAN877DUG/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF990VCP|/files/ENCFF990VCP/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.890721. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF990VCP|/files/ENCFF990VCP/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.90. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF624SON|/files/ENCFF624SON/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.898935. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF926KFU|/files/ENCFF926KFU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.813992. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF926KFU|/files/ENCFF926KFU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.82. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR291GJU | float |
ATAC-seq_ENCSR291GJU |
ATAC-seq ENCSR291GJU [biosample_summary="Homo sapiens HepG2"]
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[1.2, 40] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF439EIO.bed.gz | 6.91 MB | c7e08900ba86556a2f5c460039060c10 |
| ENCFF439EIO.bed.gz.dvc | 101.0 B | adfb3f75bdf3b990c8da210b92ea08d5 |
| ENCFF439EIO.tabix.bed.gz | 1.68 MB | 6705241b2fe7bff5edb21aaaf8e0b500 |
| ENCFF439EIO.tabix.bed.gz.dvc | 107.0 B | b5631aa53c02811dada43a3327b355ba |
| ENCFF439EIO.tabix.bed.gz.tbi | 483.91 KB | d144ffccc7d6a0fdbf64896a446ce9bb |
| ENCFF439EIO.tabix.bed.gz.tbi.dvc | 110.0 B | 22429d3f8591c855ccd43874706b67b5 |
| genomic_resource.yaml | 4.22 KB | c8ebceb7c65edea6bf563d35d1a2e28c |
| genomic_resource_original.yaml | 4.15 KB | ce1539fcb4def8cadd8951b50fa6c11e |
| statistics/ |