Resource

Id ATAC-seq/ENCSR290AUKcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR290AUK [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours"]
Description
Labels
  • accession: ENCSR290AUK
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours
  • date_created: 2016-10-11T22:36:12.168468+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR290AUK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 100 ng/mL lipopolysaccharide for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR290AUK float

ATAC-seq_ENCSR290AUK
ATAC-seq ENCSR290AUK [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR290AUK [1.86, 32.1]
n
33,331,103
mean
7
sd
3.32

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 333311031.04% 86595
chr1 3056896 1.23% 7899
chr2 2763902 1.14% 7286
chr3 2220382 1.12% 5845
chr4 1590305 0.84% 4217
chr5 1819089 1.00% 4850
chr6 2022058 1.18% 5303
chr7 1813675 1.14% 4697
chr8 1644732 1.13% 4343
chr9 1364519 0.99% 3548
chr10 1626053 1.22% 4285
chr11 1650226 1.22% 4307
chr12 1643445 1.23% 4277
chr13 795033 0.70% 2096
chr14 1036855 0.97% 2642
chr15 1059101 1.04% 2766
chr16 1111771 1.23% 2739
chr17 1369383 1.64% 3419
chr18 750071 0.93% 2021
chr19 1221318 2.08% 2816
chr20 865786 1.34% 2290
chr21 409878 0.88% 1062
chr22 544697 1.07% 1363
chrX 950938 0.61% 2520
chrY 990 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 86595 150 2091 384.91 325
global segment-length histogram

Files

Filename Size md5
ENCFF981FWB.bed.gz 2.57 MB 1d3641f0e2512ec2a66143f3a1ec6a69
ENCFF981FWB.tabix.bed.gz 945.25 KB 538ae1416a4d0e3ef22d2915ab7700ac
ENCFF981FWB.tabix.bed.gz.tbi 403.32 KB 68913388639961aa3e086b56591f1a7c
genomic_resource.yaml 1.58 KB 73a188d6575a7a0a063cbbc82999b295
statistics/