ATAC-seq_ENCSR286STX
ATAC-seq ENCSR286STX [biosample_summary="Homo sapiens heart left ventricle tissue male adult (66 years)"]
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| Id: | ATAC-seq/ENCSR286STX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR286STX [biosample_summary="Homo sapiens heart left ventricle tissue male adult (66 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (66 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN951VGV|/analyses/ENCAN951VGV/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN951VGV|/analyses/ENCAN951VGV/} has in progress subobject document {47147ba9-f204-4125-a3d0-9851b64412f4|/documents/47147ba9-f204-4125-a3d0-9851b64412f4/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF440WVI|/files/ENCFF440WVI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.79967. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF440WVI|/files/ENCFF440WVI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR286STX | float |
ATAC-seq_ENCSR286STX |
ATAC-seq ENCSR286STX [biosample_summary="Homo sapiens heart left ventricle tissue male adult (66 years)"]
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[1.29, 42.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF135EYC.bed.gz | 5.69 MB | 9a22b10d03fe2e8b68c9eb806893fb80 |
| ENCFF135EYC.bed.gz.dvc | 101.0 B | 079111881f7c5eca9d27b765730d043e |
| ENCFF135EYC.tabix.bed.gz | 1.74 MB | b0ee407c5971600e0ac41351b9109a67 |
| ENCFF135EYC.tabix.bed.gz.dvc | 107.0 B | 37b1f0c04a34a6633c1652ac3e6208cb |
| ENCFF135EYC.tabix.bed.gz.tbi | 496.2 KB | a7e02a25024eff621c7c7c24216c976e |
| ENCFF135EYC.tabix.bed.gz.tbi.dvc | 110.0 B | cb2f0720765f82f1eaa2ab3a0bcb8ab3 |
| genomic_resource.yaml | 2.8 KB | 0298ce62e5f9c4492b01069c4492eadd |
| genomic_resource_original.yaml | 2.69 KB | cf6ba6a575bc2ed6b999b9ef720641eb |
| statistics/ |