ATAC-seq_ENCSR283LPH
ATAC-seq ENCSR283LPH [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell nuclear fraction male adult (30 years)"]
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| Id: | ATAC-seq/ENCSR283LPH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR283LPH [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell nuclear fraction male adult (30 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (30 years) nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN130CSF|/analyses/ENCAN130CSF/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF411NRH|/files/ENCFF411NRH/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.830139. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF411NRH|/files/ENCFF411NRH/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR283LPH | float |
ATAC-seq_ENCSR283LPH |
ATAC-seq ENCSR283LPH [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell nuclear fraction male adult (30 years)"]
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[1.25, 45.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF349KLY.bed.gz | 2.84 MB | 78476b64eb77c2e48c8c7de071a2abe0 |
| ENCFF349KLY.bed.gz.dvc | 101.0 B | 29ecc83220ec7646b7a01467b560b561 |
| ENCFF349KLY.tabix.bed.gz | 712.41 KB | fb3a9e05098533843cc5e47345d38ba7 |
| ENCFF349KLY.tabix.bed.gz.dvc | 106.0 B | 59d5c9002e7d5f80370b2ce19845ff59 |
| ENCFF349KLY.tabix.bed.gz.tbi | 277.04 KB | e42962969f672de2a23e4e9338557446 |
| ENCFF349KLY.tabix.bed.gz.tbi.dvc | 110.0 B | e9a90eb029e97d8ea4f5eb4fdfec9e95 |
| genomic_resource.yaml | 2.76 KB | f39034363e0059092a875c5ee62d32e3 |
| genomic_resource_original.yaml | 2.61 KB | 3fee58b30901c3266390eda36ea6a7d2 |
| statistics/ |