| Id: | ATAC-seq/ENCSR278JWM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR278JWM [biosample_summary="Homo sapiens HG03558"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_error: Alignment file {ENCFF842JIO|/files/ENCFF842JIO/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 12353607 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_internal_action: Released analysis {ENCAN200ZNV|/analyses/ENCAN200ZNV/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF861UUN|/files/ENCFF861UUN/} (overlap peaks) and {ENCFF305ZQQ|/files/ENCFF305ZQQ/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 114143 and 52082 peaks. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR278JWM | float |
ATAC-seq_ENCSR278JWM |
ATAC-seq ENCSR278JWM [biosample_summary="Homo sapiens HG03558"]
|
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[1.66, 33.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF861UUN.bed.gz | 2.73 MB | 7333126f932faf634a01980b94a497b0 |
| ENCFF861UUN.bed.gz.dvc | 101.0 B | 9befb3f3567580d2ab94b633bcd6cf27 |
| ENCFF861UUN.tabix.bed.gz | 959.96 KB | 9dcdaee0861115be92028c39f762a8ed |
| ENCFF861UUN.tabix.bed.gz.dvc | 106.0 B | 34f82d5108044419cb673155173c875e |
| ENCFF861UUN.tabix.bed.gz.tbi | 430.44 KB | b7171a1172202f56a8cdf51d95e46975 |
| ENCFF861UUN.tabix.bed.gz.tbi.dvc | 110.0 B | f74141f46a43d987eb381aae567ad97c |
| genomic_resource.yaml | 2.22 KB | 8d23e0bbae0d6ff85c4d3d94cff4e4d6 |
| genomic_resource_original.yaml | 2.15 KB | 5b78fa850800be016bce0703c7e58aec |
| statistics/ |