Resource

Id ATAC-seq/ENCSR275LCFcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR275LCF [biosample_summary="Homo sapiens GM21786"]
Description
Labels
  • accession: ENCSR275LCF
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0010840/
  • biosample_summary: Homo sapiens GM21786
  • date_created: 2020-11-24T22:02:41.321740+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR275LCF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR275LCF float

ATAC-seq_ENCSR275LCF
ATAC-seq ENCSR275LCF [biosample_summary="Homo sapiens GM21786"]
 HISTOGRAM FOR ATAC-seq_ENCSR275LCF [1.5, 39.7]
n
59,695,918
mean
7.47
sd
3.92

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 596959181.86% 119557
chr1 5255463 2.11% 10352
chr2 5356046 2.21% 10874
chr3 4439326 2.24% 9145
chr4 3873288 2.04% 8105
chr5 3745637 2.06% 7654
chr6 4132096 2.42% 8303
chr7 3457120 2.17% 7019
chr8 3035329 2.09% 6260
chr9 2330247 1.68% 4637
chr10 2826704 2.11% 5716
chr11 2778969 2.06% 5482
chr12 2898603 2.17% 5764
chr13 1793744 1.57% 3723
chr14 1770446 1.65% 3447
chr15 1556986 1.53% 3069
chr16 1541401 1.71% 2869
chr17 1756808 2.11% 3240
chr18 1362347 1.70% 2821
chr19 1309807 2.23% 2215
chr20 1158020 1.80% 2307
chr21 533594 1.14% 1004
chr22 621247 1.22% 1133
chrX 2161642 1.39% 4414
chrY 1048 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 119557 150 2629 499.31 420
global segment-length histogram

Files

Filename Size md5
ENCFF890KJS.bed.gz 4.22 MB 2fb95557a559e49b92a55b7174ebff7e
ENCFF890KJS.tabix.bed.gz 1.29 MB c9429568b75f36f0e1c1803f0eb645de
ENCFF890KJS.tabix.bed.gz.tbi 505.33 KB 5b424dc8497a6b1536d1dd0345c7a0f6
genomic_resource.yaml 1.28 KB bcc44a3e7d366c1d0add8c65e4ea7f41
statistics/